Table 1

The comparison of miRTarCLIP with other related CLIP/PAR-CLIP sequencing resources

CLIPZ

doRiNA

StarBase

PARalyzer

miRTarCLIP


Resource type

Database/Web tool

Database

Database

Standalone tool

Standalone tool

Data type

Both

Both

Both

PAR-CLIP

Both

Mapping reference

Genome/transcript

-

-

Genome

23way transcript 3'UTR

miRNA-target

interaction

ElMMo [35]

PicTar [36]

Seed-rule [29]

Seed-rule [29]

TargetScan, [29,30]

miRTarBase [31]

Visualization Browser

Yes

Yes

Yes

No

Yes


Chou et al. BMC Genomics 2013 14(Suppl 1):S2   doi:10.1186/1471-2164-14-S1-S2

Open Data