Additional file 1.

Results of the simulation-based evaluation. Results of the simulation-based evaluation described in Section "Simulation of overlapping deletions" of the paper. The leftmost column specifies the number of simulated overlapping deletions (no deletion, single deletion, or pair of overlapping deletions) and the predictions (no deletion, single deletion, pair of overlapping deletions, or three or more overlapping deletions). The remainder of the table shows the corresponding counts per tool (agglomerative clustering, GASV [22], GASV with option "maximal", and CLEVER [37]) for four different settings (coverage 20× and 60×, and scenario A and B, cf. Figure 6).

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Wittler BMC Genomics 2013 14(Suppl 1):S12   doi:10.1186/1471-2164-14-S1-S12