Table 1

Summary of genes annotated by Immune Response Annotation Group (IRAG)
Chromosome Number of genes* Known genes annotated Number of transcripts annotated Number of protein coding transcripts annotated Number of complete protein coding transcripts annotated Number of predicted genes found to be pseudogenes** Number of non-organism-supported# transcripts annotated
1 103 78 218 179 120 9 65
2 102 83 292 220 122 1 86
3 74 59 167 130 60 0 38
4 186 125 452 354 222 5 119
5 72 61 174 140 85 0 47
6 90 67 220 176 97 2 81
7 76 66 163 122 92 1 37
8 45 34 102 84 39 0 23
9 62 45 132 106 53 1 38
10 21 19 84 68 32 0 20
11 9 9 13 11 8 0 3
12 105 82 221 181 95 4 68
13 68 52 173 139 69 0 67
14 84 63 265 200 100 2 103
15 38 31 100 76 38 1 39
16 23 17 58 45 17 0 23
17 39 34 79 66 39 0 18
18 14 11 19 17 8 0 3
X 158 52 540 462 258 0 294
Total 1369 988 3472 2776 1554 26 1172

*Number of gene objects created in the Otterlace annotation system.

** Processed and non-processed pseudogenes are included.

# No porcine EST or cDNA sequence was available to create these transcript predictions.

Dawson et al.

Dawson et al. BMC Genomics 2013 14:332   doi:10.1186/1471-2164-14-332

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