Additional file 1.

Comparison of effect of different preprocessing steps. A detailed comparison of calling results with different preprocessing steps in terms of dbSNP rate, Ti/Tv ratio, novel Ti/Tv ratio and NRD for all regions, inside target regions, outside ≤ 200 bp regions, and outside > 200 bp regions from Illumina whole-exome sequencing data. Raw (blue), filterY (green), trim (black) and filterY&trim (red).

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Liu et al. BMC Genomics 2012 13(Suppl 8):S8   doi:10.1186/1471-2164-13-S8-S8