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BMC Genomics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.

Volume 13 Supplement 8

The International Conference on Intelligent Biology and Medicine (ICIBM): Genomics

Research

The International Conference on Intelligent Biology and Medicine (ICIBM)

Nashville, TN, USA

22-24 April 2012

Edited by Zhongming Zhao, Yufei Huang, Hua Xu, Bing Zhang and Yu Shyr

The conference was supported by a grant from National Science Foundation, USA (1141979) and financial support from the Center for Quantitative Sciences, Vanderbilt University. There was no sponsorship or other external funding for publication of the supplement.

| Conference website

Introduction   Open Access

Genomics in 2012: challenges and opportunities in the next generation sequencing era

Zhongming Zhao, Yufei Huang, Bing Zhang, Yu Shyr, Hua Xu BMC Genomics 2012, 13(Suppl 8):S1 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

RNA-Seq analysis implicates dysregulation of the immune system in schizophrenia

Junzhe Xu, Jingchun Sun, Jingchun Chen, Lily Wang, Anna Li, Matthew Helm, Steven L Dubovsky, Silviu-Alin Bacanu, Zhongming Zhao, Xiangning Chen BMC Genomics 2012, 13(Suppl 8):S2 (17 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Analysis of high-throughput RNAi screening data in identifying genes mediating sensitivity to chemotherapeutic drugs: statistical approaches and perspectives

Fei Ye, Joshua A Bauer, Jennifer A Pietenpol, Yu Shyr BMC Genomics 2012, 13(Suppl 8):S3 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Genomic sequence analysis and characterization of Sneathia amnii sp. nov

Michael D Harwich, Myrna G Serrano, Jennifer M Fettweis, João MP Alves, Mark A Reimers, Vaginal Microbiome Consortium (additional members), Gregory A Buck, Kimberly K Jefferson BMC Genomics 2012, 13(Suppl 8):S4 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Redistribution of H3K4me2 on neural tissue specific genes during mouse brain development

Jie Zhang, Jeffrey Parvin, Kun Huang BMC Genomics 2012, 13(Suppl 8):S5 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Enrichment-based DNA methylation analysis using next-generation sequencing: sample exclusion, estimating changes in global methylation, and the contribution of replicate lanes

Michael P Trimarchi, Mark Murphy, David Frankhouser, Benjamin AT Rodriguez, John Curfman, Guido Marcucci, Pearlly Yan, Ralf Bundschuh BMC Genomics 2012, 13(Suppl 8):S6 (17 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Investigating the relationship of DNA methylation with mutation rate and allele frequency in the human genome

Junfeng Xia, Leng Han, Zhongming Zhao BMC Genomics 2012, 13(Suppl 8):S7 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data

Qi Liu, Yan Guo, Jiang Li, Jirong Long, Bing Zhang, Yu Shyr BMC Genomics 2012, 13(Suppl 8):S8 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data

Yuan Yuan, Clift Norris, Yanxun Xu, Kam-Wah Tsui, Yuan Ji, Han Liang BMC Genomics 2012, 13(Suppl 8):S9 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data

Ao Zhou, Marcus R Breese, Yangyang Hao, Howard J Edenberg, Lang Li, Todd C Skaar, Yunlong Liu BMC Genomics 2012, 13(Suppl 8):S10 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

DFI: gene feature discovery in RNA-seq experiments from multiple sources

Hatice Ozer, Jeffrey D Parvin, Kun Huang BMC Genomics 2012, 13(Suppl 8):S11 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Combining multiple ChIP-seq peak detection systems using combinatorial fusion

Christina Schweikert, Stuart Brown, Zuojian Tang, Phillip R Smith, D Frank Hsu BMC Genomics 2012, 13(Suppl 8):S12 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

A Bayesian decision fusion approach for microRNA target prediction

Dong Yue, Maozu Guo, Yidong Chen, Yufei Huang BMC Genomics 2012, 13(Suppl 8):S13 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Differential combinatorial regulatory network analysis related to venous metastasis of hepatocellular carcinoma

Lingyao Zeng, Jian Yu, Tao Huang, Huliang Jia, Qiongzhu Dong, Fei He, Weilan Yuan, Lunxiu Qin, Yixue Li, Lu Xie BMC Genomics 2012, 13(Suppl 8):S14 (17 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Automatically clustering large-scale miRNA sequences: methods and experiments

Linxia Wan, Jiandong Ding, Ting Jin, Jihong Guan, Shuigeng Zhou BMC Genomics 2012, 13(Suppl 8):S15 (17 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Multi-species data integration and gene ranking enrich significant results in an alcoholism genome-wide association study

Zhongming Zhao, An-Yuan Guo, Edwin JCG van den Oord, Fazil Aliev, Peilin Jia, Howard J Edenberg, Brien P Riley, Danielle M Dick, Jill C Bettinger, Andrew G Davies, Michael S Grotewiel, Marc A Schuckit, Arpana Agrawal, John Kramer, John I Nurnberger, Kenneth S Kendler, Bradley T Webb, Michael F Miles BMC Genomics 2012, 13(Suppl 8):S16 (17 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Species-level classification of the vaginal microbiome

Jennifer M Fettweis, Myrna G Serrano, Nihar U Sheth, Carly M Mayer, Abigail L Glascock, J Paul Brooks, Kimberly K Jefferson, Vaginal Microbiome Consortium (additional members), Gregory A Buck BMC Genomics 2012, 13(Suppl 8):S17 (17 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

CTF: a CRF-based transcription factor binding sites finding system

Yupeng He, Yizhe Zhang, Guangyong Zheng, Chaochun Wei BMC Genomics 2012, 13(Suppl 8):S18 (17 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Detecting the borders between coding and non-coding DNA regions in prokaryotes based on recursive segmentation and nucleotide doublets statistics

Suping Deng, Yixiang Shi, Liyun Yuan, Yixue Li, Guohui Ding BMC Genomics 2012, 13(Suppl 8):S19 (17 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

GLAD4U: deriving and prioritizing gene lists from PubMed literature

Jérôme Jourquin, Dexter Duncan, Zhiao Shi, Bing Zhang BMC Genomics 2012, 13(Suppl 8):S20 (17 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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