Table 5

Accuracy of causal orientation

Method

ECOLI

YEAST

NOTCH1

RELA


ANM

0.462

0.383

0.476

0.396

PNL

0.453

0.471

0.521

0.520

IGCI (Uniform/Entropy)

0.647

0.427

0.611

0.692

IGCI (Uniform/Integral)

0.605

0.441

0.561

0.669

IGCI (Gaussian/Entropy)

0.742

0.555

0.848

0.898

IGCI (Gaussian/Integral)

0.645

0.587

0.729

0.835

GPI-MML

0.485

0.390

0.251

0.395

ANM-MML

0.428

0.316

0.183

0.172

GPI

0.526

0.401

0.548

0.506

ANM-GAUSS

0.480

0.483

0.727

0.462

LINGAM

0.469

0.451

0.367

0.387

RANDOM

0.500

0.500

0.500

0.500


For each gold standard (column) dark orange cells correspond to methods that have high values of accuracy, while white cells correspond to methods that have low values of accuracy. Accuracies higher than 0.50 are shown in bold.

Statnikov et al. BMC Genomics 2012 13(Suppl 8):S22   doi:10.1186/1471-2164-13-S8-S22

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