Table 2

Comparison of different prioritization methods

Apoptosis

Cell Adhesion

DNA Repair

Hypertension

Obesity

Schizophrenia


GLAD4U Counts


AP

0.4939

0.4611

0.6670

0.3947

0.5698

0.4601


Precision at k = 50

0.8600

0.8000

0.8800

0.4800

0.7800

0.5400


Precision at k = 100

0.8300

0.7300

0.8100

0.3800

0.5500

0.4200


GLAD4U Hypergeometric


AP

0.4942

0.5723

0.8139

0.4564

0.4782

0.4280


Precision at k = 50

0.9400

0.9000

1.0000

0.5800

0.6200

0.4800


Precision at k = 100

0.9000

0.8500

0.9700

0.3900

0.5200

0.4400


EBIMed


AP

0.1567

0.1256

0.3517

0.1336

0.2673

0.2318


Precision at k = 50

0.6200

0.4800

0.8400

0.3137

0.5652

0.4423


Precision at k = 100

0.5980

0.4848

0.6700

0.2821

0.1586

0.3200


AP: Average Precision

Jourquin et al. BMC Genomics 2012 13(Suppl 8):S20   doi:10.1186/1471-2164-13-S8-S20

Open Data