Table 2

Statistics of the number of transcripts and genes detected

Sample

Number of transcripts

Number of genes

FPKMa (mean ± sd)

Coverageb (mean ± sd)

Number of genes with FPKM > 5


Control

1295-ZZ-4

18,675

15,176

15.28 ± 85.28

8.54 ± 45.80

7876

1295-ZZ-9

17,134

14,330

14.36 ± 67.49

4.66 ± 21.03

6832

1295-ZZ-13

18,638

15,205

13.52 ± 68.07

7.06 ± 34.89

7507

Case

1295-ZZ-21

18,274

14,883

14.86 ± 84.98

7.72 ± 43.89

6903

1295-ZZ-32

18,796

15,315

14.59 ± 167.18

7.14 ± 74.54

7359

1295-ZZ-36

17,837

14,668

11.84 ± 55.17

5.41 ± 24.17

6863

Pooled control

22,463

17,880

10.65 ± 70.63

18.04 ± 119.42

6134

Pooled case

22,256

17,620

11.67 ± 79.45

21.16 ± 143.79

6267


aFor individually sequenced dataset, we used FPKM (Fragments Per Kilobase of exon per Million fragments mapped) to estimate transcript expression.

bThe coverage was calculated based on the unit of transcript.

Xu et al. BMC Genomics 2012 13(Suppl 8):S2   doi:10.1186/1471-2164-13-S8-S2

Open Data