Table 1

Pairwise sequence identity scores of V1-V3 16S rDNA reference sequences of species in the mock sample.

S. epidermidis

F. nucleatum

L. crispatus

P. bivia

G. vaginalis

E. faecalis


S. epidermidis

100.0%

F. nucleatum

71.3%

100.0%

L. crispatus

79.9%

71.3%

100.0%

P. bivia

66.9%

66.6%

64.3%

100.0%

G. vaginalis

71.5%

68.1%

70.7%

69.0%

100.0%

E. faecalis

83.3%

71.3%

79.7%

65.9%

71.3%

100%


The USEARCH algorithm was used to calculate global sequence identities of the V1-V3 region of 16S rDNA reference sequences for the species in the KJMOCK sample. Accession numbers for the reference sequences are: EU373384.1, AF543300.1, FN692037.1, AB547673.1, CP002104.1, and CP002621.1.

Fettweis et al. BMC Genomics 2012 13(Suppl 8):S17   doi:10.1186/1471-2164-13-S8-S17

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