Table 1

mRNA-seq experiments from NCBI SRA.

Tissue/cell line

Number of experiments

SRA

project ID

Project name


Kidney

3

SRP000225

Illumina sequencing human kidney RNA samples to study mRNA expression levels


Liver

3


GM12878 (Blood)

7

SRP000228

RNASeq expression profiling for ENCODE project


Hep2G (Liver Carcinoma)

4


K562 (Leukemia)

9


Brain

1

SRP000626

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing


Cerebral Cortex

1


Heart

1


Liver

1


Lung

1


Skeletal Muscle

1


Liver female 1

6

SRP001558

Sex-specific and lineage-specific alternative splicing in primates


Liver male 1

6


Brain MAQC2

14

SRP001847

Evaluation of Statistical Methods for Normalization and Differential Expression in mRNA-Seq Experiments


UHR MAQC2

28


Ozer et al. BMC Genomics 2012 13(Suppl 8):S11   doi:10.1186/1471-2164-13-S8-S11

Open Data