Table 1

FastAnnotator results for five different organisms

Organism

# of entries (total base)

Processing time

% of sequences with best hit

% of annotated sequence*


C. elegans+

4,456

(1,339,253)

1.25 h

97.8%

88.1%

Bacteria example+

1,219

(423,067)

21 min

94.7%

81.3%

Plant example+

39,914

(24,168,315)

16 h

77.0%

62.9%

Clam+

101,795

(38,886,727)

15.5 h

24.5%

20.4%

Amoeba EST

13,814

(11,055,101)

3.5 h

68.4%

53.1%

Trichomonas vaginalis+

35,989

(26,716,478)

11 h

93.7%

42.0%


+RNA-Seq denovo assembly result

*Percentages of sequences had been annotated with GO, enzyme or domains.

Chen et al. BMC Genomics 2012 13(Suppl 7):S9   doi:10.1186/1471-2164-13-S7-S9

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