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BMC Genomics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.

Volume 13 Supplement 7

Eleventh International Conference on Bioinformatics (InCoB2012): Computational Biology

Proceedings

Asia Pacific Bioinformatics Network (APBioNet) Eleventh International Conference on Bioinformatics (InCoB2012)

Bangkok, Thailand

3-5 October 2012

Edited by Shoba Ranganathan, Christian Schönbach, Sissades Tongsima, Jonathan Chan and Tin Wee Tan

The articles in this supplement were supported by funding agencies as detailed in the Acknowledgement section of each article

| Conference website

Introduction   Open Access

Advances in translational bioinformatics and population genomics in the Asia-Pacific

Shoba Ranganathan, Sissades Tongsima, Jonathan Chan, Tin Wee Tan, Christian Schönbach BMC Genomics 2012, 13(Suppl 7):S1 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies

Jittima Piriyapongsa, Chumpol Ngamphiw, Apichart Intarapanich, Supasak Kulawonganunchai, Anunchai Assawamakin, Chaiwat Bootchai, Philip J Shaw, Sissades Tongsima BMC Genomics 2012, 13(Suppl 7):S2 (13 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Bayesian prediction of bacterial growth temperature range based on genome sequences

Dan B Jensen, Tammi C Vesth, Peter F Hallin, Anders G Pedersen, David W Ussery BMC Genomics 2012, 13(Suppl 7):S3 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Whole-genome sequencing and identification of Morganella morganii KT pathogenicity-related genes

Yu-Tin Chen, Hwei-Ling Peng, Wei-Chung Shia, Fang-Rong Hsu, Chuian-Fu Ken, Yu-Ming Tsao, Chang-Hua Chen, Chun-Eng Liu, Ming-Feng Hsieh, Huang-Chi Chen, Chuan-Yi Tang, Tien-Hsiung Ku BMC Genomics 2012, 13(Suppl 7):S4 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Quantitative assessment of mitochondrial DNA copies from whole genome sequencing

Hsueh-Ting Chu, William WL Hsiao, Theresa TH Tsao, Ching-Mao Chang, Yen-Wenn Liu, Chen-Chieh Fan, Han Lin, Hen-Hong Chang, Tze-Jung Yeh, Jen-Chih Chen, Dun-Ming Huang, Chaur-Chin Chen, Cheng-Yan Kao BMC Genomics 2012, 13(Suppl 7):S5 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

snpTree - a web-server to identify and construct SNP trees from whole genome sequence data

Pimlapas Leekitcharoenphon, Rolf S Kaas, Martin Christen Thomsen, Carsten Friis, Simon Rasmussen, Frank M Aarestrup BMC Genomics 2012, 13(Suppl 7):S6 (13 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome

Kwanrutai Chin-inmanu, Aroonroong Suttitheptumrong, Duangjai Sangsrakru, Sithichoke Tangphatsornruang, Somvong Tragoonrung, Prida Malasit, Sumalee Tungpradabkul, Prapat Suriyaphol BMC Genomics 2012, 13(Suppl 7):S7 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs)

Gagan Garg, Shoba Ranganathan BMC Genomics 2012, 13(Suppl 7):S8 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

FastAnnotator- an efficient transcript annotation web tool

Ting-Wen Chen, Ruei-Chi Gan, Timothy H Wu, Po-Jung Huang, Cheng-Yang Lee, Yi-Ywan M Chen, Che-Chun Chen, Petrus Tang BMC Genomics 2012, 13(Suppl 7):S9 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications

Ranjeeta Menon, Robin B Gasser, Makedonka Mitreva, Shoba Ranganathan BMC Genomics 2012, 13(Suppl 7):S10 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription

Alexis Vandenbon, Yutaro Kumagai, Shizuo Akira, Daron M Standley BMC Genomics 2012, 13(Suppl 7):S11 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Meta-analytical biomarker search of EST expression data reveals three differentially expressed candidates

Timothy H Wu, Lichieh J Chu, Jian-Chiao Wang, Ting-Wen Chen, Yin-Jing Tien, Wen-Chang Lin, Wailap V Ng BMC Genomics 2012, 13(Suppl 7):S12 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs

Jia-Shiun Khoo, Shiao-Fei Chai, Rahmah Mohamed, Sheila Nathan, Mohd Firdaus-Raih BMC Genomics 2012, 13(Suppl 7):S13 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Preferential regulation of stably expressed genes in the human genome suggests a widespread expression buffering role of microRNAs

Zhen Yang, Dong Dong, Zhaolei Zhang, M James C Crabbe, Li Wang, Yang Zhong BMC Genomics 2012, 13(Suppl 7):S14 (13 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

A computational tool for the design of live attenuated virus vaccine based on microRNA-mediated gene silencing

Duangdao Wichadakul, Wuttichai Mhuantong, Anan Jongkaewwattana, Supawadee Ingsriswang BMC Genomics 2012, 13(Suppl 7):S15 (13 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

C-mii: a tool for plant miRNA and target identification

Somrak Numnark, Wuttichai Mhuantong, Supawadee Ingsriswang, Duangdao Wichadakul BMC Genomics 2012, 13(Suppl 7):S16 (13 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

MicroRNA-centric measurement improves functional enrichment analysis of co-expressed and differentially expressed microRNA clusters

Su Yeon Lee, Kyung-Ah Sohn, Ju Han Kim BMC Genomics 2012, 13(Suppl 7):S17 (13 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Comprehensive analysis of microRNAs in breast cancer

Hong-Tai Chang, Sung-Chou Li, Meng-Ru Ho, Hung-Wei Pan, Luo-Ping Ger, Ling-Yueh Hu, Shou-Yu Yu, Wen-Hsiung Li, Kuo-Wang Tsai BMC Genomics 2012, 13(Suppl 7):S18 (13 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

The parasite specific substitution matrices improve the annotation of apicomplexan proteins

Jamshaid Ali, Shashi Thummala, Akash Ranjan BMC Genomics 2012, 13(Suppl 7):S19 (13 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Blocking Protein kinase C signaling pathway: mechanistic insights into the anti-leishmanial activity of prospective herbal drugs from Withania somnifera

Abhinav Grover, Shashank Katiyar, Jeyaraman Jeyakanthan, Vikash Dubey, Durai Sundar BMC Genomics 2012, 13(Suppl 7):S20 (13 December 2012)

Abstract | Full text | PDF | PubMed

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