Table 1

Evaluation table

Data set

Percentage of concordance


Exact match

cluster match


V. cholerae (raw reads)

91

100

V. cholerae (contigs)

85

100

S. aureus CC398 (raw reads)

88

96

S. aureus CC398 (contigs)

87

97

S. typhimurium (raw reads)

61

100

S. typhimurium (contigs)

53

100

M. tuberculosis (raw reads)

58

78

M. tuberculosis (contigs)

25

72


The percentage of concordance from comparing SNP trees from snpTree server against the four published data set.

Leekitcharoenphon et al. BMC Genomics 2012 13(Suppl 7):S6   doi:10.1186/1471-2164-13-S7-S6

Open Data