Table 2

The analysis of simplified string graph with and without Edge Adjustment

Simulated Data

Graph feature

without

Edge Adjustment

with

Edge Adjustment


100 × 36 bp

0.5% error

dataset

# of node

2502312

1572470

# of edge

2220162

26079

braid index

342736

750


100 × 36 bp

1% error

dataset

# of node

4418943

2964253

# of edge

4051264

46649

braid index

873835

802


200 × 150 bp

0.5% error

dataset

# of node

3839687

2680727

# of edge

6618017

7739

braid index

1750824

242


200 × 150 bp

1% error

dataset

# of node

5085964

4245557

# of edge

8501560

16767

braid index

2350695

413


Chang et al. BMC Genomics 2012 13(Suppl 7):S28   doi:10.1186/1471-2164-13-S7-S28

Open Data