Table 1

The edge analysis of overlap graph before and after Edge Adjustment

Simulated

E. coli Dataset

Edge Type

# of edges before

Edge Adjustment

# of edges after

Edge Adjustment


100 × 36 bp

0.5% error

dataset

Class I

92829732

92754696

[99.92%]

Class II

14519426

322510

[2.22%]

Class III

252762

118542

[46.90%]

Class IV

377856

294110

[77.84%]


100 × 36 bp

1% error

dataset

Class I

76439532

76364264

[99.90%]

Class II

24836446

749900

[3.02%]

Class III

358432

76162

[21.25%]

Class IV

132412

92834

[70.11%]


200 × 150 bp

0.5% error

dataset

Class I

115230002

115163888

[99.94%]

Class II

74214420

438274

[0.59%]

Class III

1347100

51988

[3.86%]

Class IV

403836

322746

[79.92%]


200 × 150 bp

1% error

dataset

Class I

32604042

32580388

[99.93%]

Class II

53758272

554020

[1.03%]

Class III

1422472

57494

[4.04%]

Class IV

256952

225124

[87.61%]


Chang et al. BMC Genomics 2012 13(Suppl 7):S28   doi:10.1186/1471-2164-13-S7-S28

Open Data