Table 3

Top five ranked candidate genes for each phenotype of IDDM

SN

MIM ID

Locus

Number of Candidate Genes

Top 5 Candidate Genes


1

600318

15q26

72

BLM, IGF1R, FURIN, RHCG, NR2F2

2

600319

11q13

263

PPME1, RELA, STIP1, GSTP1, MEN1

3

601941

18q21

88

BCL2, TXNL1, MYO5B, SMAD4, TNFRSF11A

4

600321

2q31

81

NEUROD1, ABCB11, WIPF1, LRP2, CCDC141

5

600883

6q25-q27

38

ESR1, PLG, TBP, VIL2, IGF2R

6

601208

14q24.3-q31

85

TSHR, FOS, EIF2B2, NEK9, PTPN21

7

601318

2q34

19

IDH1, ERBB4, PIP5K3, LANCL1, PTHR2

8

601666

6q21

51

FYN, CDC40, ATG5, CD164, TUBE1

9

603266

10q25

55

TCF7L2, GFRA1, VTI1A, ACSL5, ADRA2A

10

605598

5q31.1-q33.1

241

SPINK1, NR3C1, VDAC1, HSPA9, IL3

11

612520

12q24

216

SH2B3, TCF1, OAS1, PTPN11, OAS2

12

612521

6q25

70

ESR1, SYNE1, VIL2, LATS1, OPRM1

13

612622

4q27

17

CCNA2, IL2, MAD2L1, FGF2, TRPC3

14

613006

10q23.31

26

PTEN, ACTA2, PANK1, ANKRD1, MPHOSPH1


Li and Li BMC Genomics 2012 13(Suppl 7):S27   doi:10.1186/1471-2164-13-S7-S27

Open Data