Table 2

List of B. pseudomallei sRNA sequences with their corresponding sRNA families as reported in Rfam.

No.

sRNA

Chr/strand

Coordinates

Coordinates from Rfam

Type


1.

Cobalamin.1

1/+

1133342..1133609

(no record)

Riboswitch

2.

Cobalamin.2

1/+

2072691..2072897

2072691..2072897

Riboswitch

3.

Cobalamin.3

1/-

2090548..2090794

(no record)

Riboswitch

4.

Cobalamin.4

1/+

2090844..2091164

(no record)

Riboswitch

5.

TPP.1

1/-

1504117..1504234

1504117..1504234

Riboswitch

6.

TPP.2

1/-

3753305..3753517

3753386..3753517

Riboswitch

7.

TPP.3

2/-

1490479..1490584

1490479..1490584

Riboswitch

8.

FMN

1/+

772307..772458

772307..772458

Riboswitch

9.

Glycine

1/+

3984000..3984174

3984000..3984108

Riboswitch

10.

SAH_riboswitch

1/-

3907800..3907867

3907800..3907867

Riboswitch

11.

Mini-ykkC

1/+

1359254..1359300

1359254..1359300

Putative riboswitch

12.

sucA

1/-

2274625..2274707

2274625..2274707

Putative riboswitch

13.

yybP-ykoY

1/+

3066135..3066276

(no record)

Putative riboswitch

14.

LR-PK1*

1/-

(not predicted)

2314148..2314399

Cis-acting RNA

15.

isrK

1/-

98332..98411

(no record)

Hfq-binding RNA

16.

6S

1/-

1132173..1132396

1132214..1132395

Trans-acting RNA

17.

SRP_bact

1/+

1735400..1735501

1735400..1735501

Trans-acting RNA

18.

tmRNA

1/+

3041943..3042311

3041943..3042311

Trans-acting RNA

19.

Anti-hemB

1/-

3790883..3790964

(no record)

Trans-acting RNA

20.

CRISPR-DR28

1/+

3578911..3578934

(no record)

Trans-acting RNA

21.

RNaseP_bact_a

1/-

3481314..3481770

3481359..3481770

Ribozyme

22.

P9

2/-

1749221..1749373

1749223..1749307

Gene


* The LR-PK1 sRNA was not predicted in this study but has been identified in Rfam.

Khoo et al. BMC Genomics 2012 13(Suppl 7):S13   doi:10.1186/1471-2164-13-S7-S13

Open Data