Table 2

EST counts and odd ratios of 11 well-known cancer-related genes present in our list of DEGs.

Gene symbol

Description

Total

Normal

Cancer

Odds ratio


BCAN

Homo sapiens brevican

391

79

312

10.4

KRT14

Homo sapiens keratin 14

205

40

165

9.1

KRT16

Homo sapiens keratin 16

41

7

34

7.8

MMP11

Homo sapiens matrix metallopeptidase 11 (stromelysin 3)

68

20

48

5.3

MUC1

Homo sapiens mucin 1, cell surface associated

69

30

39

4.2

VEGFA

Homo sapiens vascular endothelial growth factor A

82

33

49

3.7

AGRN

Homo sapiens agrin

503

143

360

3.5

COL3A1

Homo sapiens collagen, type III, alpha 1

145

90

55

3.5

MMP1

Homo sapiens matrix metallopeptidase 1 (interstitial collagenase)

70

29

41

3.3

EGFR

Homo sapiens epidermal growth factor receptor (erythroblasticleukemia viral (v-erb-b) oncogene homolog, avian)

49

79

312

10.4

AFP

Homo sapiens alpha-fetoprotein

391

40

165

9.1


Wu et al. BMC Genomics 2012 13(Suppl 7):S12   doi:10.1186/1471-2164-13-S7-S12

Open Data