Email updates

Keep up to date with the latest news and content from BMC Genomics and BioMed Central.

This article is part of the supplement: Eleventh International Conference on Bioinformatics (InCoB2012): Computational Biology

Open Access Highly Accessed Proceedings

An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications

Ranjeeta Menon1, Robin B Gasser2, Makedonka Mitreva34 and Shoba Ranganathan15*

Author Affiliations

1 Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, New South Wales 2109, Australia

2 Department of Veterinary Science, The University of Melbourne, 250 Princes Highway, Werribee, Victoria 3030, Australia

3 The Genome Institute, Washington University School of Medicine, 444 Forest Park Boulevard, St. Louis, MO 63108, USA

4 Department of Genetics, Washington University School of Medicine, 444 Forest Park Boulevard, St. Louis, MO 63108, USA

5 Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, 8 Medical Drive, Singapore 117597

For all author emails, please log on.

BMC Genomics 2012, 13(Suppl 7):S10  doi:10.1186/1471-2164-13-S7-S10

Published: 13 December 2012

Additional files

Additional File 1:

Comparison of rESTs from Teladorsagia circumcincta with C. elegans.

Format: XLS Size: 1.5MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 2:

Teladorsagia circumcincta homologues in Clade V of the phylum Nematoda, comprising Haemonchus contortus, Necator americanus, Nippostrongylus brasiliensis, Ostertagia ostertagi, Pristionchus pacificus, Ancylostoma caninum, Ancylostoma ceylanicum and Dictyocaulus viviparus.

Format: XLS Size: 3.8MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 3:

Metabolic pathways in Teladorsagia circumcincta mapped by Kyoto Encyclopedia of Genes and Genomes.

Format: XLS Size: 82KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 4:

GO Annotation for proteins.

Format: XLS Size: 113KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 5:

Secreted proteins predicted from rESTs from Teladorsagia circumcincta and their homologues and RNAi phenotypes.

Format: XLS Size: 136KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 6:

Secretory proteins predicted from Teladorsagia circumcincta rESTs - comparison with proteomic data.

Format: XLS Size: 30KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 7:

Transmembrane proteins predicted from rESTs from Teladorsagia circumcincta and their homologues and RNAi phenotypes.

Format: XLS Size: 576KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 8:

GO Annotation for secreted proteins.

Format: XLS Size: 33KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 9:

Pathway Analysis of secreted proteins using KOBAS.

Format: XLS Size: 27KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 10:

Pathway Analysis of secreted proteins using KAAS.

Format: XLS Size: 26KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 11:

Pathway analysis of secreted proteins obtained from SecretomeP.

Format: XLS Size: 32KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 12:

Protein Domain Analysis in Teladorsagia circumcincta.

Format: XLS Size: 288KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 13:

Top NR description of Teladorsagia circumcincta protein sequences.

Format: XLS Size: 2.6MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 14:

InterProScan analysis :representative protein domains/families.

Format: XLS Size: 33KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 15:

Comparison of secreted proteins from Teladorsagia circumcincta with C. elegans.

Format: XLS Size: 563KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data