Table 2

List of transcripts modulated in response to Fe-deficiency and reported in the Discussion

#

ProbeIDa

Descriptionb

UniProtIDc

TC-IDd

FCe

p, value, adjf


Biological process GO:0008150

1

TC192724_853_37_S

SRC2

B6SND5

TC192724

3.02

0.014

2

TC192763_241_40_S

Putative uncharacterized protein

C6T3H9

TC192763

2.11

0.030

3

TC193319_801_34_X2

Putative uncharacterized protein

Q40127

TC193319

-3.35

0.016

4

TC195341_998_35_S

Putative uncharacterized protein

Q40127

TC195341

-3.33

0.011

5

TC196753_1279_37_S

D-protein

Q8VWY8

TC196753

6.11

0.028

6

TC197095_638_34_X2

NtEIG-E80 protein (elicitor inducible gene product)

Q9FXS6

TC197095

4.69

0.024

7

TC198323_947_40_S

Predicted protein

B9MWQ1

TC198323

2.51

0.032

8

TC199253_1439_39_S

Zinc finger protein. putative

B9SLY6

TC199253

2.82

0.029

9

TC202360_487_40_S

EF-1 alpha-like protein

O49604

TC202360

2.15

0.024

10

TC204571_463_40_S

ATBET12, putative

B9STJ3

TC204571

-2.62

0.023

11

TC205207_890_35_S

Putative uncharacterized protein

Q40127

TC205207

-3.09

0.048

12

TC207200_893_35_S

VIT_00038707001

E0CVH7

TC207200

2.44

0.042

13

TC207407_739_37_S

Predicted protein

B9HQW6

TC207407

2.36

0.042

14

TC207665_362_36_S

Putative uncharacterized protein

A9PCS8

TC207665

-2.39

0.048

15

TC208712_583_40_S

Germin-like protein

Q5DT23

TC208712

2.35

0.046

16

TC208745_692_37_S

Putative uncharacterized protein

A5C0F7

TC208745

4.84

0.016

17

TC209321_482_35_S

VITISV_041870

A5C9V2

TC209321

6.94

0.011

18

TC209504_302_40_S

Hydrolase

Q4PSL3

TC209504

2.78

0.013

19

TC211515_728_35_S

Amino acid binding protein, putative

B9RBU8

TC211515

3.66

0.014

20

TC212954_1137_35_S

Predicted protein

B9HZ36

TC212954

2.02

0.046

21

TC213456_100_34_S

Putative D-protein

Q6K482

TC213456

4.97

0.035

22

TC214599_1004_37_S

Nodulin-like proteinAt2g16660/T24I21.7

Q9SLF1

TC214599

6.87

0.042

23

TC215994_489_36_S

Putative aminotransferase, class V family protein

Q1H8R9

TC215994

2.08

0.036

Biological regulation GO: 0065007

24

TC191806_907_40_S

BHLH transcriptional

Q5GA67

TC191806

6.56

0.024

25

TC191963_1058_37_S

Ferritin

Q308A9

TC191963

-4.71

0.008

26

TC194645_664_37_S

DNA binding protein

B9SZX2

TC194645

12.34

0.015

27

TC198138_1325_39_S

Thioredoxin peroxidase 1

Q7Y240

TC198138

7.06

0.046

28

TC203853_451_35_S

Heterogeneous nuclear ribonucleoprotein 27C

B9SSS5

TC203853

2.90

0.028

29

TC206202_500_40_S

Thioredoxin II

B9RLX0

TC206202

-2.47

0.048

30

TC215976_330_38_X2

Ferritin

Q308A9

TC215976

-3.64

0.005

Cellular component organization or biogenesis GO:0071840

31

NP000231_1302_40_S

Extensin-like protein Dif54

Q43505

NP000231

8.22

0.011

32

TC191669_1238_40_S

Extensin-like protein Ext1

Q8VWM5

TC191669

5.53

0.003

33

TC204863_245_40_S

Extensin-like protein Ext1

Q8VWM5

TC204863

8.98

0.013

34

TC212258_415_40_S

Extensin-like protein Dif54

Q43505

TC212258

9.13

0.011

35

TC212487_279_40_S

Extensin-like protein Ext1

Q8VWM5

TC212487

6.44

0.0004

36

TC214133_1133_40_S

Extensin-like protein Dif10

Q43504

TC214133

5.42

0.024

Cellular process GO:0009987

37

TC207486_546_40_S

Pollen specific actin-depolymerizing factor 2

Q8H2B6

TC207486

4.81

0.005

Establishment of localization GO: 0051234

38

NP796451_1558_36_S

Root-specific metal transporter

Q84LR1

NP796451

12.00

0.024

39

TC191581_1150_36_S

Iron-regulated transporter 1

Q9XFB2

TC191581

9.42

0.013

40

TC192292_1560_39_S

Hippocampus abundant transcript 1 protein

B9SG70

TC192292

14.79

0.0004

41

TC200857_1001_40_S

Ammonium transporter 1 member 1

P58905

TC200857

2.05

0.043

42

TC205660_580_35_S

Metal tolerance protein

B9GLJ8

TC205660

3.77

0.049

43

TC206149_966_36_S

Aluminum-activated malate transporter 9

Q9LS46

TC206149

2.41

0.048

44

TC208376_922_36_S

Oligopeptide transporter, putative

B9SA63

TC208376

17.67

0.004

45

TC215768_1111_35_X2

Aquaporin

Q8W506

TC215768

-2.03

0.023

46

TC215874_553_40_S

Sec14 cytosolic factor, putative

B9S6A7

TC215874

3.5

0.009

47

TC216882_1121_38_X2

Hippocampus abundant transcript 1 protein

B9SG70

TC216882

9.29

0.003

Metabolic process GO:0008152; Carbon utilization GO:0015976

48

TC204225_1412_35_S

Phosphoenolpyruvate carboxylase

P27154

TC204225

3.31

0.039

49

TC214978_700_36_S

Phosphoenolpyruvate carboxylase

P27154

TC214978

3.74

0.036

Metabolic process GO:0008152; Catabolic process GO:0009056

50

TC194584_1854_37_S

Cysteine-type peptidase, putative

B9STX0

TC194584

3.61

0.011

51

TC203350_1573_40_S

Vacuolar processing enzyme 1

B2M1T0

TC203350

2.18

0.026

52

TC208154_2059_38_S

Beta-amylase PCT-BMYI

Q94EU9

TC208154

-3.06

0.042

53

TC215970_3405_40_S

Protease Do-like 7

Q8RY22

TC215970

4.01

0.032

Metabolic process GO:0008152; Cellular metabolic process GO:0044237

54

TC192049_1645_40_S

Sulfate adenylyltransferase

Q43183

TC192049

-2.48

0.029

55

TC193934_828_38_X2

Methylthioribose kinase, putative

B9RY82

TC193934

2.12

0.023

56

TC194380_182_36_S

S-adenosylmethionine-dependent methyltransferase, putative

B9SZS6

TC194380

2.03

0.045

57

TC195032_699_35_S

CBL-interacting serine/threonine-protein kinase 11

O22932

TC195032

-2.62

0.030

58

TC198109_708_34_X2

Phosphofructokinase, putative

B9RRX6

TC198109

2.00

0.036

59

TC199972_1164_40_S

Fructose-bisphosphate aldolase

Q2PYX3

TC199972

2.53

0.022

60

TC201350_645_36_S

Protein phosphatase-2C

O82469

TC201350

2.10

0.028

61

TC201692_547_40_S

Xyloglucan endotransglucosylase/hydrolase 14

B9RKL5

TC201692

7.29

0.013

62

TC206357_361_38_S

Catalase isozyme 1

P30264

TC206357

-2.79

0.046

63

TC212978_951_34_S

Phosphoenolpyruvate carboxylase

Q8S915

TC212978

3.62

0.030

64

TC214826_1684_35_S

ATP binding protein, putative

B9RII2

TC214826

12.39

0.011

65

TC214837_697_40_S

Cytokinin oxidase/dehydrogenase

C3VPM8

TC214837

4.64

0.015

66

TC216529_896_39_S

Peroxidase 7

Q9SY33

TC216529

9.25

0.011

67

TC216572_542_40_S

Avr9/Cf-9 rapidly elicited protein 216

Q84QE0

TC216572

-2.61

0.042

Metabolic process GO:0008152; Oxidation reduction GO:0055114

68

TC191412_2284_38_S

Ferric-chelate reductase

Q6EMC0

TC191412

15.21

0.008

69

TC191893_9_37_S

Superoxide dismutase

Q7YK44

TC191893

-2.29

0.030

70

TC194139_2083_38_S

Ferric-chelate reductase

B9RIU2

TC194139

-10.76

0.023

71

TC194227_76_41_X2

Superoxide dismutase

Q7YK44

TC194227

-2.20

0.038

72

TC196465_645_40_X2

Gibberellin 20 oxidase

B9RUX2

TC196465

3.46

0.009

73

TC199400_1132_37_S

Peroxidase 2, putative

B9SZA0

TC199400

-2.05

0.022

74

TC201832_1136_40_S

Gibberellin 20 oxidase

B9RUX2

TC201832

3.00

0.013

75

TC205699_961_40_S

Chlorophyll synthase, putative

B9RJ38

TC205699

7.12

0.019

76

TC207549_14_41_S

Cytochrome C oxidase polypeptide vib

B9RJN9

TC207549

3.05

0.016

77

TC208767_662_38_S

Cationic peroxidase 1

B9SWU3

TC208767

4.75

0.022

78

TC213071_429_40_S

Peroxidase

Q07446

TC213071

-3.29

0.032

Metabolic process GO:0008152; Primary metabolic process GO:0044238

79

TC197609_880_35_S

Zinc finger protein. putative

B9T6Q0

TC197609

3.54

0.014

80

TC192838_1967_36_S

Endo-1,4-beta-glucanase

B9RLZ9

TC192838

2.45

0.042

Metabolic process GO:0008152; Secondary metabolic process GO:0019748

81

TC197109_626_37_S

Flavonoid 3-hydroxylase, putative

B9T1C6

TC197109

2.56

0.024

82

TC198786_1057_37_S

UDP-glucose:glucosyltransferase

B6EWY6

TC198786

2.19

0.022

83

TC203267_704_38_S

UDP-glucose:flavonoid glucoside 1,6-glucosyltransferase

C5NN14

TC203267

2.76

0.013

84

TC212095_566_35_S

UDP-glucose:flavonoid glucoside 1,6-glucosyltransferase

C5NN14

TC212095

3.69

0.018

Response to stimulus GO:0050896

85

TC193192_66_41_X2

Peroxidase 4

B7UCP4

TC193192

-3.86

0.029

86

TC208216_282_40_S

Pit1 protein

Q40539

TC208216

4.71

0.019

87

TC195700_1019_40_S

Peroxidase

B9VRK9

TC195700

-2.67

0.013

No hits found

88

TC203837_663_35_S

No hits found

TC203837

2.06

0.046

89

TC204355_604_36_S

No hits found

TC204355

-3.09

0.038

90

TC207055_310_37_S

No hits found

TC207055

3.05

0.030

91

TC209134_260_40_S

No hits found

TC209134

30.06

0.007

92

TC209988_335_40_S

No hits found

TC209988

6.82

0.013

93

TC211287_216_38_S

No hits found

TC211287

7.63

0.011

94

TC212074_241_40_S

No hits found

TC212074

6.44

0.023

95

TC212933_306_37_S

No hits found

TC212933

9.59

0.011

96

TC214074_254_40_S

No hits found

TC214074

2.22

0.041

97

TC215128_252_35_S

No hits found

TC215128

3.86

0.029


aID of TomatoArray2.0 probes

bDescription of each transcript. Bold discussed; italics undiscussed.

cUniProtID [26] of the first hit obtained by BlastP analysis

dID of the TC of DFCI Tomato Gene Index (Release 12.0) [92]

eFold change value

fadjusted p-value

Zamboni et al. BMC Genomics 2012 13:101   doi:10.1186/1471-2164-13-101

Open Data