This article is part of the supplement: Proceedings of the 6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology (X-meeting 2010)

Open Access Proceedings

AlgaGEM – a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome

Cristiana Gomes de Oliveira Dal’Molin*, Lake-Ee Quek, Robin W Palfreyman and Lars K Nielsen

Author Affiliations

Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane Qld 4072 Australia

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BMC Genomics 2011, 12(Suppl 4):S5  doi:10.1186/1471-2164-12-S4-S5

Published: 22 December 2011

Additional files

Additional file 1:

Supplemental material file. Table S1. List of inter-organelle transporters and enzymes’ localization based on biochemistry information.

Format: XLSX Size: 32KB Download file

Open Data

Additional file 2:

Supplemental material file. AlgaGEM-COBRA tool box. The folders include AraGEM (sbml format) and constraints to run flux balance analysis for different metabolic scenarios using COBRA tool box.

Format: ZIP Size: 1.2MB Download file

Open Data

Additional file 3:

Supplemental material file. Table S2. Metabolic flux simulations.

Format: XLSX Size: 924KB Download file

Open Data