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BMC Genomics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 12 Supplement 4

Proceedings of the 6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology (X-meeting 2010)

Proceedings

6th International Conference of the Brazilian Association for Bioinformatics and Computational Biology (X-meeting 2010)

Ouro Preto, Brazil

15-18 November 2010

Edited by R. A. P. Nagem (Co-ordinating Editor), A. M. Durham, A. T. R. Vasconcelos, C. B. Monteiro-Vitorello, E. Dias-Neto, G. B. Domont, G. C. Oliveira, L. Felicori, L. Bleicher, J. M. Ortega, M. S. Skaf, O. Norberto de Souza, P. R. Kuser-Falcão, R. Guerra-Sá, R. DeMarco, T. M. Venancio and T. Koide

The organizers would like to thank the following agencies for their financial support of the conference: CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico) and FAPEMIG (Fundação de Amparo à Pesquisa do Estado de Minas Gerais).

Conference website

Can the vector space model be used to identify biological entity activities?

Wesley D Maciel, Alessandra C Faria-Campos, Marcos A Gonçalves, Sérgio VA Campos BMC Genomics 2011, 12(Suppl 4):S1 (22 December 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Amino acids biosynthesis and nitrogen assimilation pathways: a great genomic deletion during eukaryotes evolution

RLM Guedes, F Prosdocimi, GR Fernandes, LK Moura, HAL Ribeiro, JM Ortega BMC Genomics 2011, 12(Suppl 4):S2 (22 December 2011)

Abstract | Full text | PDF | PubMed

Preimplantation development regulatory pathway construction through a text-mining approach

Elisa Donnard, Adriano Barbosa-Silva, Rafael LM Guedes, Gabriel R Fernandes, Henrique Velloso, Matthew J Kohn, Miguel A Andrade-Navarro, J Ortega BMC Genomics 2011, 12(Suppl 4):S3 (22 December 2011)

Abstract | Full text | PDF | PubMed

Origin of multiple periodicities in the Fourier power spectra of the Plasmodium falciparum genome

Miriam CS Nunes, Elizabeth F Wanner, Gerald Weber BMC Genomics 2011, 12(Suppl 4):S4 (22 December 2011)

Abstract | Full text | PDF | PubMed

AlgaGEM – a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome

Cristiana Gomes de Oliveira Dal’Molin, Lake-Ee Quek, Robin W Palfreyman, Lars K Nielsen BMC Genomics 2011, 12(Suppl 4):S5 (22 December 2011)

Abstract | Full text | PDF | PubMed

FReDoWS: a method to automate molecular docking simulations with explicit receptor flexibility and snapshots selection

Karina S Machado, Evelyn K Schroeder, Duncan D Ruiz, Elisângela ML Cohen, Osmar Norberto de Souza BMC Genomics 2011, 12(Suppl 4):S6 (22 December 2011)

Abstract | Full text | PDF | PubMed

Effect of the explicit flexibility of the InhA enzyme from Mycobacterium tuberculosis in molecular docking simulations

Elisangela ML Cohen, Karina S Machado, Marcelo Cohen, Osmar Norberto de Souza BMC Genomics 2011, 12(Suppl 4):S7 (22 December 2011)

Abstract | Full text | PDF | PubMed

Molecular dynamics study of the archaeal aquaporin AqpM

Raul Araya-Secchi, JA Garate, David S Holmes, Tomas Perez-Acle BMC Genomics 2011, 12(Suppl 4):S8 (22 December 2011)

Abstract | Full text | PDF | PubMed

Improvement in the prediction of the translation initiation site through balancing methods, inclusion of acquired knowledge and addition of features to sequences of mRNA

Lívia Silva, Felipe de Souza Teixeira, José Ortega, Luis Zárate, Cristiane Nobre BMC Genomics 2011, 12(Suppl 4):S9 (22 December 2011)

Abstract | Full text | PDF | PubMed

A method to identify important dynamical states in boolean models of regulatory networks: application to regulation of stomata closure by ABA in A. thaliana

Cristhian A Bugs, Giovani R Librelotto, José CM Mombach BMC Genomics 2011, 12(Suppl 4):S10 (22 December 2011)

Abstract | Full text | PDF | PubMed

A singular value decomposition approach for improved taxonomic classification of biological sequences

Anderson R Santos, Marcos A Santos, Jan Baumbach, John A McCulloch, Guilherme C Oliveira, Artur Silva, Anderson Miyoshi, Vasco Azevedo BMC Genomics 2011, 12(Suppl 4):S11 (22 December 2011)

Abstract | Full text | PDF | PubMed

Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns

Douglas EV Pires, Raquel C de Melo-Minardi, Marcos A dos Santos, Carlos H da Silveira, Marcelo M Santoro, Wagner Meira BMC Genomics 2011, 12(Suppl 4):S12 (22 December 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

A rigorous approach to facilitate and guarantee the correctness of the genetic testing management in human genome information systems

Luciano V Araújo, Simon Malkowski, Kelly R Braghetto, Maria R Passos-Bueno, Mayana Zatz, Calton Pu, João E Ferreira BMC Genomics 2011, 12(Suppl 4):S13 (22 December 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Modeling and analysis of cell membrane systems with probabilistic model checking

Mirlaine A Crepalde, Alessandra C Faria-Campos, Sérgio VA Campos BMC Genomics 2011, 12(Suppl 4):S14 (22 December 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

PRODIS: a proteomics data management system with support to experiment tracking

Alessandra Faria-Campos, Herbert Fernandes-Rausch, Celina Val, Peter Thorun, Vinicius Abreu, Paulo Batista, Paulo Mendonça, Vinicius Alves, Maíra Rodrigues, Adriano Pimenta, Glória Franco, Sérgio Campos BMC Genomics 2011, 12(Suppl 4):S15 (22 December 2011)

Abstract | Full text | PDF | PubMed