Table 1

Updates vs. number of states. Algorithm timings obtained with 32-bit version of Mathematica 7.0 running in a personal computer with Intel Xeon X5355 processor and 4Gb of RAM. For the simulations with 100, 200, 300 and 400 updates 30 initial conditions were used except for 500 updates where only initial condition was used given to its very long duration.

Updates

Average number of states

StandardDeviation

Average running time (s)


100

27.9

1.97135

88.3

200

33.5

1.35824

2250

300

34.4333

1.04

17900

400

36

1.01678

68000

500

36

-

253700


Bugs et al. BMC Genomics 2011 12(Suppl 4):S10   doi:10.1186/1471-2164-12-S4-S10

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