Input of UASIS Aligner. Users could choose to upload the flanking sequences of SNPs as file, or input the sequences directly. Currently we support FASTQ format for Bowtie and FASTA/FASTQ for BWA. Other parameters include which chromosome to align and how many mismatches allowed.
Poo et al. BMC Genomics 2011 12(Suppl 3):S9 doi:10.1186/1471-2164-12-S3-S9