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BMC Genomics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 12 Supplement 3

Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011): Computational Biology

Proceedings

Asia Pacific Bioinformatics Network (APBioNet) Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011)

Kuala Lumpur, Malaysia

30 November - 2 December 2011

Edited by Christian Schoenbach, Sheila Nathan, Tin Wee Tan and Shoba Ranganathan

Conference website

Introduction   Open Access

InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia

Christian Schönbach, Tin Tan, Janet Kelso, Burkhard Rost, Sheila Nathan, Shoba Ranganathan BMC Genomics 2011, 12(Suppl 3):S1 (30 November 2011)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

DetoxiProt: an integrated database for detoxification proteins

Zhen Yang, Ying Yu, Lei Yao, Guangui Li, Lin Wang, Yiyao Hu, Haibin Wei, Li Wang, Riadh Hammami, Roxanne Razavi, Yang Zhong, Xufang Liang BMC Genomics 2011, 12(Suppl 3):S2 (30 November 2011)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Liverome: a curated database of liver cancer-related gene signatures with self-contained context information

Langho Lee, Kai Wang, Gang Li, Zhi Xie, Yuli Wang, Jiangchun Xu, Shaoxian Sun, David Pocalyko, Jong Bhak, Chulhong Kim, Kee-Ho Lee, Ye Jang, Young Yeom, Hyang-Sook Yoo, Seungwoo Hwang BMC Genomics 2011, 12(Suppl 3):S3 (30 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

INDUS - a composition-based approach for rapid and accurate taxonomic classification of metagenomic sequences

Monzoorul Mohammed, Tarini Ghosh, Rachamalla Reddy, Chennareddy Venkata Siva Kumar Reddy, Nitin Singh, Sharmila S Mande BMC Genomics 2011, 12(Suppl 3):S4 (30 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Extracting regulatory modules from gene expression data by sequential pattern mining

Mingoo Kim, Hyunjung Shin, Tae Su Chung, Je-Gun Joung, Ju Han Kim BMC Genomics 2011, 12(Suppl 3):S5 (30 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

ApicoAlign: an alignment and sequence search tool for apicomplexan proteins

Jamshaid Ali, Umadevi Paila, Akash Ranjan BMC Genomics 2011, 12(Suppl 3):S6 (30 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Profiling ascidian promoters as the primordial type of vertebrate promoter

Kohji Okamura, Riu Yamashita, Noriko Takimoto, Koki Nishitsuji, Yutaka Suzuki, Takehiro G Kusakabe, Kenta Nakai BMC Genomics 2011, 12(Suppl 3):S7 (30 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Perfect Hamming code with a hash table for faster genome mapping

Yoichi Takenaka, Shigeto Seno, Hideo Matsuda BMC Genomics 2011, 12(Suppl 3):S8 (30 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

UASIS: Universal Automatic SNP Identification System

Danny C C Poo, Shaojiang Cai, James T L Mah BMC Genomics 2011, 12(Suppl 3):S9 (30 November 2011)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

High similarity of phylogenetic profiles of rate-limiting enzymes with inhibitory relation in Human, Mouse, Rat, budding Yeast and E. coli

Min Zhao, Hong Qu BMC Genomics 2011, 12(Suppl 3):S10 (30 November 2011)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

In silico prediction of the granzyme B degradome

Lawrence JK Wee, Esmond PS Er, Lisa FP Ng, JC Tong BMC Genomics 2011, 12(Suppl 3):S11 (30 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

i-rDNA: alignment-free algorithm for rapid in silico detection of ribosomal gene fragments from metagenomic sequence data sets

Monzoorul Mohammed, Tarini Ghosh, Sudha Chadaram, Sharmila S Mande BMC Genomics 2011, 12(Suppl 3):S12 (30 November 2011)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Expression profile of small RNAs in Acacia mangium secondary xylem tissue with contrasting lignin content - potential regulatory sequences in monolignol biosynthetic pathway

Seong Siang Ong, Ratnam Wickneswari BMC Genomics 2011, 12(Suppl 3):S13 (30 November 2011)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

In silico secretome analysis approach for next generation sequencing transcriptomic data

Gagan Garg, Shoba Ranganathan BMC Genomics 2011, 12(Suppl 3):S14 (30 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Effective gene collection from the metatranscriptome of marine microorganisms

Atsushi Ogura, Mengjie Lin, Yuya Shigenobu, Atushi Fujiwara, Kazuho Ikeo, Satoshi Nagai BMC Genomics 2011, 12(Suppl 3):S15 (30 November 2011)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Interrogation of alternative splicing events in duplicated genes during evolution

Ting-Wen Chen, Timothy H Wu, Wailap V Ng, Wen-Chang Lin BMC Genomics 2011, 12(Suppl 3):S16 (30 November 2011)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Analysis of 16S rRNA environmental sequences using MEGAN

Suparna Mitra, Mario Stärk, Daniel H Huson BMC Genomics 2011, 12(Suppl 3):S17 (30 November 2011)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Identification of nucleotide patterns enriched in secreted RNAs as putative cis-acting elements targeting them to exosome nano-vesicles

Arsen O Batagov, Vladimir A Kuznetsov, Igor V Kurochkin BMC Genomics 2011, 12(Suppl 3):S18 (30 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Assessing the utility of gene co-expression stability in combination with correlation in the analysis of protein-protein interaction networks

Ashwini Patil, Kenta Nakai, Kengo Kinoshita BMC Genomics 2011, 12(Suppl 3):S19 (30 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets

Hufeng Zhou, Limsoon Wong BMC Genomics 2011, 12(Suppl 3):S20 (30 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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