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This article is part of the supplement: Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011): Computational Biology

Open Access Proceedings

Perfect Hamming code with a hash table for faster genome mapping

Yoichi Takenaka*, Shigeto Seno and Hideo Matsuda

Author Affiliations

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka Univesity, 1-5 Yamadaoka, Suita, Osaka, Japan

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BMC Genomics 2011, 12(Suppl 3):S8  doi:10.1186/1471-2164-12-S3-S8

Published: 30 November 2011

Additional files

Additional file 1:

DNA sequences and their code words. All the 5-mer DNA sequences and their code words on 4-ary (5,3)-perfect Hamming codes.

Format: XLSX Size: 13KB Download file

Open Data