Table 1

Pairwise alignments of plasmodia GSTs with yeast GST.

EMBOSS/water program

BLOSUM62 matrix

PfFSmat60 matrix


Organism

Length

Similarity (%)

Length

Similarity (%)

P. berghei (PBANKA_102390)

P. chabaudi (PCHAS_102470)

P. falciparum (PF14_0187)

P. knowlesi (PKH_132970)

P. vivax (PVX_085515)

P. yoelii (PY05088)

200

208

206

200

200

208

39.50

36.50

37.40

38.50

38.00

36.50

247

247

248

246

250

250

55.90

56.30

57.30

57.70

57.60

54.80

FASTA program

BLOSUM50 matrix

PfFSmat60 matrix

Organism

Length

E-value

Length

E-value

P. berghei (PBANKA_102390)

P. chabaudi (PCHAS_102470)

P. falciparum (PF14_0187)

P. knowlesi (PKH_132970)

P. vivax (PVX_085515)

P. yoelii (PY05088)

71

22

22

190

166

73

0.05

0.15

1

0.05

0.07

0.10

229

229

233

231

231

231

3.90E-041

5.00E-039

1.80E-016

2.30E-042

1.00E-042

2.90E-037


Ali et al. BMC Genomics 2011 12(Suppl 3):S6   doi:10.1186/1471-2164-12-S3-S6

Open Data