Additional file 6.

Supplementary Figure 4: Number of Best Bidirectional Hits (BBHs) uniquely obtained by SMAT but not by BLOSUM90 The numbers of Best Bidirectional Hits (BBHs) of nine apicomplexan species were calculated against Arabidopsis thaliana which are detected by using SMAT50 but not by BLOSUM90 and vice-versa. Similarly BBHs uniquely detected by SMAT60, SMAT70, SMAT80 and SMAT90 matrices but not by BLSOUM90 and vice-versa were calculated. In P. vivax, T. gondii, C. parvum, N. caninum and T. parva BLOSUM90 gives slightly higher number of unique BBHs compared to SMAT50 but for rest other cases SMAT matrices generally pick higher number of unique BBHs.

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Ali et al. BMC Genomics 2011 12(Suppl 3):S6   doi:10.1186/1471-2164-12-S3-S6