Additional file 10.
Supplementary Figure 8: Alignment extension of experimentally characterized P. falciparum kinase with PfFSmat60 matrix The sequences compared are the experimentally characterized P. falciparum protein kinase (PF11_0220) and PIK-related protein kinase and rapamycin target of Saccharomyces cerevisiae (gi: 6322526). While BLOSUM50 gave an alignment score of 23.4 bits at an E-value 0.31 with an overlap of only 71 amino acid residues (637-707:2090-2157), PfFSmat60 gave an alignment score of 4872.5 bits at an E-value 0.0 and the overlap was 1990 amino acid residues (1-1675:375-2307). The fasta program (FASTA package, version 3) was used for alignment.
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Ali et al. BMC Genomics 2011 12(Suppl 3):S6 doi:10.1186/1471-2164-12-S3-S6