Table 2

Biological implication of regulatory modules

GO-slim

SMD category

Calcium

Salt treatment

Mutants

Oxidative stress

RNA processing

Stress

DNA damage

Nutrient effects

Chemical effects

Chemostat

Starvation

Mutant vs Wild-type

Total


Response to stress

154,651

142,140

28,467

16,889

23

3,230

527

462

29

2

18

0

346,438

Carbohydrate metabolism

15,360

19,295

19,747

1,534

0

1,545

156

6

196

18

0

5

57,862

Generation of precursor metabolites and energy

222

1,186

399

37

15,692

149

0

0

0

0

0

0

17,685

Biological process unknown

2,959

911

129

0

0

25

0

0

0

0

0

0

4,024

Cell homeostasis

0

0

0

514

0

0

0

0

0

0

0

0

514

Cellular respiration

0

0

1

13

0

0

0

0

0

0

0

0

14

Electron transport

6

0

0

0

0

1

0

0

0

0

0

0

7

Lipid metabolism

0

1

0

5

0

0

0

0

0

0

0

0

6

Amino acid and derevative metabolism

0

6

0

0

0

0

0

0

0

0

0

0

6

Sporulation

2

0

0

0

0

0

0

0

0

0

0

0

2


Total

173,200

163,539

48,743

18,992

15,715

4,950

683

468

225

20

18

5

426,558


Regulatory modules: the cell contains the number of the RMs belonging to the specified context by both GO-slim term and SMD category

Kim et al. BMC Genomics 2011 12(Suppl 3):S5   doi:10.1186/1471-2164-12-S3-S5

Open Data