Table 4

Sources of protein sequences and annotations.

Resource

data type

data source


Mouse proteins

Protein sequence

Ensembl

Viral proteins

Protein sequence

RefSeq2

UniProt/SwissProt

Protein sequence

UniProt3

UniRef90

Protein sequence

UniProt3

CDD

Protein domains

NCBI4

NCBI Taxonomy

Taxonomy

NCBI5

eSLDB

Subcellular localization

eSLDB6

GO

Gene ontology

Gene Ontology7


1http://www.ensembl.org webcite, 2http://www.ncbi.nlm.nih.gov/RefSeq/ webcite, 3http://www.uniprot.org webcite, 4http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml webcite, 5http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/ webcite, 6http://gpcr2.biocomp.unibo.it/esldb/ webcite, 7http://www.geneontology.org/ webcite

Kinjo et al. BMC Genomics 2011 12(Suppl 3):S21   doi:10.1186/1471-2164-12-S3-S21

Open Data