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This article is part of the supplement: Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011): Computational Biology

Open Access Proceedings

Identification of nucleotide patterns enriched in secreted RNAs as putative cis-acting elements targeting them to exosome nano-vesicles

Arsen O Batagov*, Vladimir A Kuznetsov and Igor V Kurochkin*

Author Affiliations

Department of Genome and Gene Expression Data Analysis, Bioinformatics Institute, 30 Biopolis str #07-01, Singapore, 138671

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BMC Genomics 2011, 12(Suppl 3):S18  doi:10.1186/1471-2164-12-S3-S18

Published: 30 November 2011

Additional files

Additional file 1:

Figure S1. Statistical characteristics of eRNA motifs. The number of sequences in the ECER partitions.

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Additional file 2:

Table S1. Motifs enriched in eRNAs.

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Additional file 3:

Figure S2. Secondary structures for sequence region 0 to 0.3 of full length for the selected 32 eRNAs (see Fig. 7).

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Additional file 4:

Figure S3. Secondary structures for sequence region 0.3 to 0.7 of full length for the selected 32 eRNAs (see Fig. 7).

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Additional file 5:

Figure S4. Secondary structures for sequence region 0.7 to 1.0 of full length for the selected 32 eRNAs (see Fig. 7).

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Additional file 6:

Table S2. 32 eRNAs containing the tripartite motif.

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Additional file 7:

Table S3. Full list of eRNAs.

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