Table 6

CT highly modulated genes in the "Secondary metabolic process" functional category.

Gene_ID

Description

Metabolic Process

Profile

Expression

in C

FC EV/BV

FC H/BV


VIT_02s0025g04020

S-N-methylcoclaurine 3'-hydroxylase

Alkaloid biosynthesis

1

E

-5.2

-2.4

VIT_12s0035g01080

carotenoid isomerase 1, chloroplast precursor

Carotenoid biosynthesis

1

E

-5.9

-1.7

VIT_06s0080g00810

lycopene beta cyclase (LYC)

Carotenoid biosynthesis

1

E

-6.1

-1.1

VIT_17s0000g09610

CYP71D10

Electron transport

1

E

-16.9

-5.2

VIT_09s0002g01090

flavonoid 3-monooxygenase

Flavonoid metabolism

1

E

-6.4

-2.9

VIT_16s0115g00340

UDP-glucose:flavonoid glucosyltransferase

Flavonoid metabolism

1

E

-9.8

-5.2

VIT_08s0007g04520

caffeic acid 3-O-methyltransferase

Phenolic acid metabolism

1

E

-6.2

-1.7

VIT_17s0000g01790

4-coumarate-CoA ligase 2

Phenylpropanoid metabolism

1

E

-5.4

-1.2

VIT_15s0024g00850

Geranylgeranyl diphosphate synthase

Terpenoid metabolism

1

E

-5.9

-1.2

VIT_17s0000g06280

geranylgeranyl reductase

Terpenoid metabolism

1

E

-5.0

-2.2


VIT_15s0046g03570

Salutaridine reductase

Alkaloid biosynthesis

2

E

-2.5

-6.6

VIT_15s0021g01060

CYP72A1

Electron transport

2

E

-3.4

-7.5

VIT_18s0001g09650

CYP81E1

Electron transport

2

E

-1.8

-5.1

VIT_16s0098g00860

Flavanone 3-hydroxylase

Flavonoid metabolism

2

E

-3.0

-7.7

VIT_08s0105g00380

Leucoanthocyanidin dioxygenase

Flavonoid metabolism

2

E

-3.7

-8.7

VIT_16s0039g01670

cinnamoyl-CoA reductase

Phenolic acid metabolism

2

E

-2.9

-5.4

VIT_14s0171g00300

4-coumarate-CoA ligase

Phenylpropanoid metabolism

2

E

-1.8

-6.0

VIT_16s0039g00990

Glutathione S-transferase 8 GSTU8

Secondary metabolism/Oxidative stress

2

E

-1.5

-5.1


VIT_19s0015g02500

CYP72A1

Electron transport

3

E

-1.2

-7.0

VIT_19s0014g04980

Cinnamyl alcohol dehydrogenase

Phenolic acid metabolism

3

E

-1.6

-6.9


VIT_07s0031g00620

zeaxanthin epoxidase (ZEP) (ABA1)

Carotenoids biosynthesis

4

E

-13.8

-9.0

VIT_03s0063g01590

CYP82C2

Electron transport

4

E

-6.8

-3.6

VIT_01s0011g02960

Leucoanthocyanidin reductase 1

Flavonoid metabolism

4

E

-4.6

-6.5

VIT_05s0049g01120

Glutathione S-transferase 25 GSTU7

Secondary metabolism/Oxidative stress

4

E

-5.2

-6.4

VIT_04s0023g01640

steroid 22-alpha-hydroxylase (CYP90B1) (DWF4)

Electron transport

4

NE

-10.0

-13.1


VIT_12s0134g00620

UDP-glucose:flavonoid glucosyltransferase

Flavonoid metabolism

5

E

10.3

0.5

VIT_06s0004g06400

UDP-glucose:flavonoid glucosyltransferase

Flavonoid metabolism

5

E

9.3

1.2

VIT_19s0015g02950

Secologanin synthase CYP72A1

Alkaloid biosynthesis

5

NE

7.4

1.4

VIT_04s0210g00030

strictosidine synthase

Alkaloid biosynthesis

5

NE

7.0

1.4

VIT_15s0048g01970

CYP708A1

Electron transport

5

NE

9.3

0.8

VIT_19s0027g00040

CYP72A59

Electron transport

5

NE

5.7

1.8

VIT_02s0012g02340

CYP76C4

Electron transport

5

NE

5.9

1.1

VIT_07s0129g00810

CYP81E8

Electron transport

5

NE

5.7

1.5

VIT_19s0090g01620

CYP89H3

Electron transport

5

NE

5.8

0.5

VIT_11s0016g01040

CYP92A2v4

Electron transport

5

NE

18.3

2.0

VIT_06s0009g02910

Flavonoid 3',5'-hydroxylase

Flavonoid metabolism

5

NE

18.7

1.7

VIT_06s0009g03010

Flavonoid 3',5'-hydroxylase [Vitis vinifera]

Flavonoid metabolism

5

NE

6.3

1.2

VIT_03s0110g00340

Cinnamyl alcohol dehydrogenase

Phenolic acid metabolism

5

NE

15.2

1.3

VIT_11s0016g01050

ferulate 5-hydroxylase

Phenolic acid metabolism

5

NE

8.2

0.7

VIT_08s0007g05050

4-coumarate--CoA ligase

Phenylpropanoid metabolism

5

NE

5.4

0.5

VIT_00s0240g00020

Glutathione S-transferase 23 GSTU23

Secondary metabolism/Oxidative stress

5

NE

21.1

2.7

VIT_01s0026g01370

glutathione S-transferase 29 GSTU18

Secondary metabolism/Oxidative stress

5

NE

5.8

0.7

VIT_19s0093g00290

GLUTATHIONE S-TRANSFERASE TAU 25

Secondary metabolism/Oxidative stress

5

NE

39.3

2.2

VIT_19s0014g02550

(-)-germacrene D synthase

Sesquiterpene biosynthesis

5

NE

5.5

0.6


VIT_16s0050g01590

UDP-glucose:flavonoid glucosyltransferase

Flavonoid metabolism

6

E

3.5

6.0

VIT_16s0039g01100

phenylalanine ammonia-lyase [Vitis vinifera]

Phenylpropanoid metabolism

6

E

2.6

7.0

VIT_16s0039g01240

phenylalanine ammonia-lyase [Vitis vinifera]

Phenylpropanoid metabolism

6

E

2.7

6.5

VIT_17s0000g09550

CYP71A26

Electron transport

6

NE

3.1

9.3

VIT_06s0009g03130

CYP79A2

Electron transport

6

NE

3.9

10.9

VIT_13s0106g00280

CYP79A2

Electron transport

6

NE

2.6

23.9

VIT_15s0048g01480

geraniol 10-hydroxylase

Monoterpenoids biosynthesis

6

NE

3.0

12.7

VIT_08s0040g03040

Glutathione S-transferase GSTL1

Secondary metabolism/Oxidative stress

6

NE

4.9

7.5

VIT_12s0034g01650

glutathione S-transferase Z2 GSTZ2

Secondary metabolism/Oxidative stress

6

NE

4.2

7.6

VIT_16s0100g01120

Stilbene synthase

Stilbene metabolism

6

NE

6.2

9.7

VIT_16s0100g01010

Stilbene synthase

Stilbene metabolism

6

NE

20.7

19.9

VIT_16s0100g00830

Stilbene synthase

Stilbene metabolism

6

NE

3.3

5.7

VIT_16s0100g00750

Stilbene synthase

Stilbene metabolism

6

NE

11.8

12.6

VIT_10s0042g00920

Stilbene synthase

Stilbene metabolism

6

NE

15.3

19.3

VIT_16s0100g00780

Stilbene synthase

Stilbene metabolism

6

NE

13.7

25.1

VIT_16s0100g01040

stilbene synthase - grape

Stilbene metabolism

6

NE

6.2

8.3

VIT_16s0100g00910

stilbene synthase - grape

Stilbene metabolism

6

NE

8.2

15.3

VIT_16s0100g01020

stilbene synthase [Vitis pseudoreticulata]

Stilbene metabolism

6

NE

9.8

15.4

VIT_16s0100g00960

stilbene synthase [Vitis pseudoreticulata]

Stilbene metabolism

6

NE

9.7

15.0

VIT_10s0042g00840

stilbene synthase [Vitis pseudoreticulata]

Stilbene metabolism

6

NE

25.6

38.3

VIT_16s0100g01030

stilbene synthase [Vitis quinquangularis]

Stilbene metabolism

6

NE

7.5

16.4

VIT_16s0100g01160

stilbene synthase [Vitis vinifera]

Stilbene metabolism

6

NE

9.2

13.4

VIT_16s0100g00810

stilbene synthase [Vitis vinifera]

Stilbene metabolism

6

NE

12.5

12.7

VIT_16s0100g01170

stilbene synthase 1 [Vitis vinifera]

Stilbene metabolism

6

NE

6.4

6.8

VIT_16s0100g00930

Stilbene synthase 2

Stilbene metabolism

6

NE

10.3

11.5

VIT_16s0100g00760

stilbene synthase 2 [Vitis sp. cv. 'Norton']

Stilbene metabolism

6

NE

20.4

25.5


VIT_01s0137g00560

CYP71B34

Electron transport

7

E

1.0

5.1

VIT_18s0001g12800

Dihydroflavonol 4-reductase

Flavonoid metabolism

7

E

1.0

5.9

VIT_17s0000g07210

flavonoid 3'-hydroxylase [Vitis vinifera]

Flavonoid metabolism

7

E

1.7

7.4

VIT_16s0039g01280

phenylalanine ammonia-lyase [Vitis vinifera]

Phenylpropanoid metabolism

7

E

2.3

8.7

VIT_12s0028g00920

Glutathione S-transferase 9 GSTF9

Secondary metabolism/Oxidative stress

7

E

1.3

5.6

VIT_19s0090g00140

5-alpha-taxadienol-10-beta-hydroxylase

Diterpenoid biosynthesis

7

NE

1.8

10.1

VIT_03s0091g00040

limonoid UDP-glucosyltransferase

Limonoids metablolism

7

NE

1.3

5.6

VIT_16s0039g01130

phenylalanine ammonia-lyase [Vitis vinifera]

Phenylpropanoid metabolism

7

NE

4.6

24.4

VIT_16s0100g01200

stilbene synthase

Stilbene metabolism

7

NE

3.6

12.9


VIT_19s0015g02700

Glutathione S-transferase 25 GSTU25

Secondary metabolism/Oxidative stress

8

E

9.9

4.1

VIT_19s0015g02890

Glutathione S-transferase 25 GSTU25

Secondary metabolism/Oxidative stress

8

E

10.8

7.0

VIT_19s0093g00150

Glutathione S-transferase 25 GSTU25

Secondary metabolism/Oxidative stress

8

E

8.7

5.8

VIT_13s0064g00810

9,10[9',10']carotenoid cleavage dioxygenase [Vitis vinifera]

Carotenoid metabolism

8

NE

10.0

7.2

VIT_19s0015g02100

CYP72A59

Electron transport

8

NE

27.5

6.2

VIT_06s0009g02850

CYP79A2

Electron transport

8

NE

6.2

2.0

VIT_07s0129g00770

CYP81D2

Electron transport

8

NE

61.2

8.7

VIT_07s0129g00830

CYP81D2

Electron transport

8

NE

15.4

6.0

VIT_03s0038g04620

isoflavone reductase

Isoflavone metabolism

8

NE

14.6

4.7

VIT_03s0038g04680

isoflavone reductase Bet v 6.0101

Isoflavone metabolism

8

NE

10.0

6.9

VIT_03s0038g04690

Isoflavone reductase protein 6

Isoflavone metabolism

8

NE

11.5

8.6

VIT_03s0038g04630

isoflavone reductase related protein

Isoflavone metabolism

8

NE

134.7

14.6

VIT_02s0025g02940

Caffeic acid O-3-methyltransferase

Phenolic acid metabolism

8

NE

6.2

3.4

VIT_15s0107g00210

Cinnamyl alcohol dehydrogenase

Phenolic acid metabolism

8

NE

15.1

4.2

VIT_13s0067g00560

Cinnamyl alcohol dehydrogenase

Phenolic acid metabolism

8

NE

26.8

12.4

VIT_02s0025g03110

Cinnamyl alcohol dehydrogenase

Phenolic acid metabolism

8

NE

10.2

7.6

VIT_13s0064g00290

Cinnamyl alcohol dehydrogenase

Phenolic acid metabolism

8

NE

11.1

4.9

VIT_19s0093g00110

Glutathione S-transferase 22 GSTU22

Secondary metabolism/Oxidative stress

8

NE

101.3

29.5

VIT_19s0015g02610

Glutathione S-transferase 25 GSTU25

Secondary metabolism/Oxidative stress

8

NE

36.3

8.6

VIT_19s0015g02730

Glutathione S-transferase 25 GSTU25

Secondary metabolism/Oxidative stress

8

NE

13.7

3.5

VIT_19s0027g00460

Glutathione S-transferase 25 GSTU25

Secondary metabolism/Oxidative stress

8

NE

25.0

8.1

VIT_06s0004g05670

Glutathione S-transferase 25 GSTU7

Secondary metabolism/Oxidative stress

8

NE

10.4

2.5

VIT_00s0240g00050

Glutathione S-transferase 8 GSTU19

Secondary metabolism/Oxidative stress

8

NE

116.7

16.8

VIT_19s0093g00160

Glutathione S-transferase 8 GSTU19

Secondary metabolism/Oxidative stress

8

NE

11.9

3.5

VIT_19s0093g00220

Glutathione S-transferase 8 GSTU19

Secondary metabolism/Oxidative stress

8

NE

51.5

8.2

VIT_19s0093g00310

Glutathione S-transferase 8 GSTU19

Secondary metabolism/Oxidative stress

8

NE

10.7

6.4

VIT_19s0015g02560

GLUTATHIONE S-TRANSFERASE TAU 25

Secondary metabolism/Oxidative stress

8

NE

28.1

3.6

VIT_12s0035g02100

Glutathione S-transferase Z1 GSTZ1

Secondary metabolism/Oxidative stress

8

NE

12.8

3.6

VIT_16s0100g00920

stilbene synthase - grape

Stilbene metabolism

8

NE

12.1

7.2


For each gene (Gene_ID) the annotation (Description), the function (Metabolic Process), the cluster number (Profile), the expression in C (E = expressed but not highly modulated; NE = not expressed) and the Fold Change (FC) referred to BV are reported.

Pastore et al. BMC Genomics 2011 12:631   doi:10.1186/1471-2164-12-631

Open Data