Table 5

CT highly modulated genes in the "Carbohydrate metabolic process" functional category.

Gene_ID

Description

Metabolic Process

Profile

Expression

in C

FC EV/BV

FC H/BV


VIT_18s0072g00770

fructose-1,6-bisphosphatase, cytosolic

Gluconeogenesis

1

E

-12.1

-4.3

VIT_07s0205g00090

glycogen synthase 2

Glycogenesis

1

E

-6.6

-1.2

VIT_18s0001g15580

glycogenin glucosyltransferase (glycogenin)

Glycogenesis

1

E

-6.5

-2.1

VIT_06s0004g06920

fructose-6-phosphate-2-kinase

Glycolysis/Gluconeogenesis

1

E

-6.6

-1.6

VIT_06s0004g05900

Phosphopyruvate hydratase.

Glycolysis/Gluconeogenesis

1

E

-5.6

-1.5

VIT_01s0011g00250

6-phosphogluconolactonase

Pentose phosphate pathway

1

E

-5.9

-1.5

VIT_14s0030g01900

ribose-5-phosphate isomerase

Pentose phosphate pathway/Calvin cycle

1

E

-7.8

-2.1

VIT_02s0087g00440

Beta-amylase 8

Starch metabolism

1

E

-5.4

-1.7

VIT_17s0000g07680

alpha-N-aEtylglucosaminidase

Sugar metabolism

1

E

-5.09

-1.37

VIT_18s0072g01040

Invertase, neutral/alkaline

Sugar metabolism

1

E

-5.3

-1.9

VIT_00s1530g00010

stachyose synthase precursor

Sugar metabolism

1

E

-5.7

-3.7

VIT_05s0029g01140

sucrose-phosphate synthase

Sugar metabolism

1

E

-6.5

-0.5

VIT_11s0065g00150

glycogen synthase

Glycogenesis

1

NE

-5.1

-1.1

VIT_03s0038g04570

ADP-glucose pyrophosphorylase large subunit 1

Starch metabolism

1

NE

-8.3

-2.2


VIT_04s0023g03010

fructose-bisphosphate aldolase, chloroplast precursor

Glycolysis

2

E

-4.0

-5.6

VIT_14s0068g00680

glyEraldehyde-3-phosphate dehydrogenase A, chloroplast precursor

Glycolysis

2

E

-6.7

-9.8

VIT_14s0108g00270

aldose 1-epimerase

Glycolysis/Gluconeogenesis

2

E

-1.9

-5.2

VIT_03s0088g01190

malate dehydrogenase, glyoxysomal precursor

Malic acid metabolism

2

E

-1.6

-5.5

VIT_08s0007g01570

fructose 1,6-bisphosphatase

Pentose phosphate pathway

2

E

-6.9

-13.1

VIT_11s0078g00310

isoamylase-type starch-debranching enzyme 1

Starch metabolism

2

E

-3.3

-7.6

VIT_05s0049g01130

aldo/keto reductase

Sugar metabolism

2

E

-6.2

-7.1

VIT_00s2527g00010

beta-fructosidase/invertase

Sugar metabolism

2

E

-3.7

-5.2

VIT_14s0060g00740

galactinol synthase [Vitis riparia]

Sugar metabolism

2

NE

-5.3

-8.1


VIT_05s0094g00930

Phosphoglucomutase/phosphomannomutase C terminal

Carbohydrate metabolic proEss

4

E

-10.6

-10.3

VIT_08s0007g07600

pyruvate kinase, cytosolic isozyme

Glycolysis

4

E

-6.9

-5.5

VIT_15s0048g00370

transketolase, chloroplast precursor

Glycolysis

4

E

-12.5

-9.9

VIT_05s0020g02310

pyruvate, orthophosphate dikinase

Pyruvate metabolism

4

E

-15.0

-9.7

VIT_13s0019g02330

GDP-mannose pyrophosphorylase (GMP1)

Sugar metabolism

4

E

-4.7

-5.2


VIT_18s0089g00590

GlyEraldehyde-3-phosphate dehydrogenase, cytosolic

Glycolysis

5

NE

5.1

0.6

VIT_10s0003g05550

carbohydrate oxidase

Pentose phosphate pathway

5

NE

16.3

0.8

VIT_14s0060g00730

galactinol synthase

Sugar metabolism

5

NE

10.2

1.2


VIT_05s0062g00990

aldo/keto reductase AKR

Aldehyde detoxification pathways (oxidative stress)

6

E

4.3

6.0

VIT_02s0025g01560

UDP-glucose 4-epimerase GEPI48

Sugar metabolism

6

E

6.2

7.6

VIT_06s0004g02060

aldehyde dehydrogenase 3B1

Aldehyde detoxification pathways (oxidative stress)

6

NE

2.3

7.2

VIT_08s0007g01010

aldo/keto reductase

Aldehyde detoxification pathways (oxidative stress)

6

NE

10.6

16.8

VIT_13s0064g01420

succinate dehydrogenase [ubiquinone] flavoprotein subunit

Citric acid cycle

6

NE

4.5

7.0

VIT_07s0005g00440

pyruvate kinase

Glycolysis

6

NE

5.7

15.3

VIT_00s0233g00030

trehalose-6-phosphate phosphatase

Stress toleranE

6

NE

2.2

7.9


VIT_02s0241g00180

UDP-D-GLUCURONATE 4-EPIMERASE 5 GAE5

Carbohydrate metabolic proEss

7

E

1.4

13.8

VIT_14s0036g01210

trehalose 6-phosphate synthase

Stress toleranE

7

E

0.8

5.9

VIT_13s0019g04370

phosphoglucomutase/phosphomannomutase

Carbohydrate metabolic proEss

7

NE

1.6

9.6

VIT_00s0173g00110

Trehalose-phosphatase

Starch and sucrose metabolism

7

NE

1.4

8.2

VIT_11s0037g00710

trehalose-phosphate phosphatase

Starch and sucrose metabolism

7

NE

1.4

13.9

VIT_03s0063g00410

Alpha-amylase

Starch metabolism

7

NE

1.2

7.5


VIT_04s0044g01130

alcohol dehydrogenase [Vitis vinifera]

Fermentative metabolism

8

E

7.1

2.4

VIT_04s0044g01120

alcohol dehydrogenase [Vitis vinifera]

Fermentative metabolism

8

E

12.9

5.1

VIT_07s0005g03360

malate dehydrogenase, cytosolic

Malic acid metabolism

8

E

5.8

4.3

VIT_19s0085g01240

gamma hydroxybutyrate dehydrogenase-like protein

Butanoate metabolism

8

NE

7.9

5.6

VIT_15s0046g00910

serine/threonine protein phosphatase 1; PP1

Carbohydrate metabolic proEss

8

NE

7.6

3.0

VIT_04s0008g02300

pyruvate dehydrogenase E1 beta subunit

Fermentative metabolism

8

NE

11.3

11.2

VIT_07s0205g00070

phosphoenolpyruvate carboxykinase

Gluconeogenesis

8

NE

41.7

17.4

VIT_14s0171g00440

GlyEraldehyde-3-phosphate dehydrogenase GAPC3, cytosolic

Glycolysis

8

NE

27.4

3.8

VIT_01s0137g00090

aldehyde dehydrogenase (NAD+)

Glycolysis/Gluconeogenesis

8

NE

5.9

7.2

VIT_01s0137g00080

aldehyde dehydrogenase (NAD+)

Glycolysis/Gluconeogenesis

8

NE

14.0

12.7

VIT_07s0005g00430

pyruvate kinase

Glycolysis/Gluconeogenesis

8

NE

6.9

5.7

VIT_07s0005g03350

malate dehydrogenase, cytosolic

Malic acid metabolism

8

NE

7.7

2.7

VIT_03s0038g00040

NADP dependent malic enzyme

Malic acid metabolism

8

NE

21.5

3.2

VIT_16s0039g01050

NADP dependent malic enzyme

Malic acid metabolism

8

NE

34.2

9.6

VIT_16s0039g00580

NADP dependent malic enzyme

Malic acid metabolism

8

NE

8.1

6.2

VIT_15s0045g00190

NADP dependent malic enzyme

Malic acid metabolism

8

NE

40.8

6.5

VIT_04s0008g00180

NADP-dependent malic enzyme

Malic acid metabolism

8

NE

14.0

3.0

VIT_16s0013g01670

6-phosphogluconate dehydrogenase, cytosolic

Pentose phosphate pathway

8

NE

34.3

27.4

VIT_02s0012g03060

6-phosphogluconate dehydrogenase, decarboxylating

Pentose phosphate pathway

8

NE

13.2

12.8

VIT_05s0051g00010

beta-amylase 1

Starch metabolism

8

NE

8.1

5.4

VIT_16s0022g00740

granule-bound starch synthase Ib precursor

Starch metabolism

8

NE

34.1

36.4

VIT_00s0131g00420

Isoamylase isoform 3

Starch metabolism

8

NE

6.4

3.2

VIT_00s1562g00010

Sucrose synthase 2

Sugar metabolism

8

NE

19.9

3.2

VIT_18s0075g00330

sucrose-phosphate synthase

Sugar metabolism

8

NE

11.4

8.2


For each gene (Gene_ID) the annotation (Description), the function (Metabolic Process), the cluster number (Profile), the expression in C (E = expressed but not highly modulated; NE = not expressed) and the Fold Change (FC) referred to BV are reported.

Pastore et al. BMC Genomics 2011 12:631   doi:10.1186/1471-2164-12-631

Open Data