Table 4

Cluster distribution of highly modulated genes in CT and C berries.

CT

C

Cluster number

Expression profile

Total genes

Genes not expressed in C

Genes not highly modulated in C

Total genes

Genes not expressed in CT

Genes not highly modulated in CT

1

404

23

381

3

0

3

2

251

30

221

21

5

16

3

58

4

54

16

1

15

4

172

25

147

1

0

1

5

357

303

54

5

2

3

6

196

164

32

38

7

31

7

89

54

35

34

10

24

8

492

426

66

2

1

1


Expression profiles of the 2019 CT and 120 C highly modulated genes during berry ripening were clustered in eight groups obtained by the k-means method using Pearson's correlation distance. The representative profile and the number of genes in each cluster are indicated. For each cluster, the CT highly modulated genes that are expressed without high modulation or not expressed at all in control berries are indicated, and similarly the C highly modulated genes that are expressed without high modulation in CT berries or not expressed at all are indicated.

Pastore et al. BMC Genomics 2011 12:631   doi:10.1186/1471-2164-12-631

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