Table 3

Differentially regulated AP2/ERF genes during ripening in the flesh tissues.

Genes up-regulated in the transition from veraison to ripe in the flesh tissues

Genes down-regulated in the transition from veraison to ripe in the flesh tissues

Name

Fold Change (log2)

S.D.

Family-Group

Name

Fold Change (log2)

S.D.

Family-Group


VvERF046

6.46

0.65

ERF-V

VvERF114

-14.37

ERF-X

VvERF118

5.31

1.87

ERF-X

VvERF146

-7.94

RAV

VvERF047

5.2

0.64

ERF-V

VvERF100

-7.3

ERF-IX

VvERF027

4.69

ERF-III

VvERF107

-6.48

ERF-IX

VvERF053

4.5

3.5

ERF-VI

VvAP2-1

-6.07

AP2

VvERF072

4.27

1.61

ERF-IX

VvERF099

-5.85

5.29

ERF-IX

VvERF071

4.14

1.66

ERF-IX

VvERF085

-5.64

2.69

ERF-IX

VvERF023

4

0.81

ERF-III

VvERF106

-5.23

0.89

ERF-IX

VvERF092

3.45

1.88

ERF-IX

VvAP2-5

-4.9

AP2

VvAP2-13

3.35

1.35

AP2

VvERF097

-4.71

ERF-IX

VvERF095

3.13

1.09

ERF-IX

VvERF010

-4.64

2.29

ERF-II

VvAP2-8

3.13

0.39

AP2

VvERF029

-4.54

4.02

ERF-III

VvAP2-3

3.05

AP2

VvERF022

-4.44

1.46

ERF-III

VvERF094

2.81

1.81

ERF-IX

VvERF111

-3.96

0.03

ERF-IX

VvERF103

2.56

ERF-IX

VvAP2-17

-3.83

1.85

AP2

VvERF045

2.47

2.23

ERF-V

VvAP2-16

-3.53

AP2

VvERF006

2.45

1.35

ERF-II

VvERF020

-3.51

ERF-III

VvAP2-12

2.3

1.74

AP2

VvERF054

-3.49

0.08

ERF-VI

VvERF087

-3.49

ERF-IX

VvERF079

-3.25

2.53

ERF-IX

VvERF096

-3.16

2.47

ERF-IX

VvERF016

-3.13

2.01

ERF-III

VvERF05

-3.12

2.4

ERF-I

VvERF122

-3

1.09

ERF-6-L

VvERF117

-2.81

0.6

ERF-X

VvERF024

-2.42

1.07

ERF-III

VvERF040

-2.38

0.41

ERF-IV

VvERF051

-2.34

0.96

ERF-V

VvERF098

-2.21

1.47

ERF-IX

VvERF018

-2.09

ERF-III


Relative mRNA levels ERF, AP2 and RAV members up- or down-regulated in the flesh tissues of the grapevine berry during transition from the veraison stage to full ripeness, quantified by RT-qPCR, according to the 2-ΔΔCt method. The results shown are from at least three independent replicates. Expression values for which a standard deviation (SD) is not provided, correspond to samples that did not reach the selected threshold fluorescence level before the 39th cycle in one of the two ripening stages.

Licausi et al. BMC Genomics 2010 11:719   doi:10.1186/1471-2164-11-719

Open Data