Table 1

A comparison of AP2/ERF families and groups between monocot (Oryza sativa) and dicot (Arabidopsis thaliana, Populus trichocarpa, Vitis vinifera) species.

Family

Group

Arabidopsis

Vitis

Poplar

Rice

RATIOS

Vitis/Arabidopsis

Vitis/Poplar

Vitis/Rice


ERF

I

10

5

5

9

0.50

1.00

0.56

II

15

8

20

16

0.53

0.40

0.50

III

23

22

35

27

0.95

0.62

0.81

IV

9

5

6

6

0.56

0.83

0.83

V

5

11

10

8

2.20

1.10

1.38

VI

8

5

11

6

0.63

0.45

0.83

VII

5

3

6

15

0.60

0.50

0.20

VIII

15

11

17

15

0.73

0.65

0.73

IX

17

40

42

18

2.35

0.95

2.22

X

8

10

9

12

1.25

1.11

0.83

VI-L

4

2

4

3

0.50

0.50

0.67

Xb-L

3

0

4

10

122

122

169

145

1.00

0.72

0.84

RAV

6

6

6

5

1.00

1.00

1.20

AP2

18

20

26

29

1.11

0.77

0.69

Soloist

1

1

1

1

1.00

1.00

1.00

147

149

202

180

1.01

0.73

0.83


Number of genes present in each family and group within the AP2/ERF superfamily in the plant species whose genome has been fully sequenced. A comparison of group and family-size between the grapevine AP2/ERF sequences identified in this study and those present in the Rice, Poplar, Arabidopsis Transcription Factor Databases are provided as ratios.

Licausi et al. BMC Genomics 2010 11:719   doi:10.1186/1471-2164-11-719

Open Data