Additional file 3.

Comparison between defense-related genes in V. vinifera and V. riparia at 12 and 24 h after mock-inoculation with distilled water. Defense-related genes considered for the comparison are those functionally categorized as 'resistance', 'stress', 'cell wall' and 'secondary metabolism' and are shown in the 'defense-related' lists in Additional files 1 and 2. The tables on the left show the total numbers of genes whose basal expression is higher in V. riparia (overexpressed in Vr) or V. vinifera (overexpressed in Vv) within each category. The tables on the right report mean logarithmic fluorescence values of transcripts within each category (mean Vr and mean Vv), the ratio of the means calculated for each genotype and the resulting fold change. Microarray fluorescence data from the two time-points were normalized and analyzed separately to avoid detecting basal differences based on the response to illumination.

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Polesani et al. BMC Genomics 2010 11:117   doi:10.1186/1471-2164-11-117