Table 1

OFDEG values for genomes sourced from NCBI.

Organism

100 bp

200 bp

40,000 bp


Acinetobacter sp. ADP1

-0.09469 ± 0.0057

-0.07171 ± 0.0053

-0.03765 ± 0.0010

Bacillus anthracis Ames 0581

-0.09552 ± 0.0058

-0.07474 ± 0.0067

-0.04156 ± 0.0014

Prochlorococcus marinus MIT 9211

-0.09507 ± 0.0049

-0.07274 ± 0.0042

-0.04361 ± 0.0045

Streptococcus pneumoniae R6

-0.09439 ± 0.0048

-0.07250 ± 0.0045

-0.03773 ± 0.0010

Shigella flexneri 2a str. 2457T

-0.09326 ± 0.0044

-0.07058 ± 0.0030

-0.03486 ± 0.0005

Escherichia coli str. K12 substr. W3110

-0.09310 ± 0.0039

-0.07054 ± 0.0046

-0.03498 ± 0.0006

Thermoplasma volcanium GSS1

-0.09296 ± 0.0047

-0.07194 ± 0.0050

-0.03639 ± 0.0010

Pseudomonas aeruginosa PA7

-0.09655 ± 0.0067

-0.07664 ± 0.0064

-0.04511 ± 0.0045

Xylella fastidiosa M23

-0.09410 ± 0.0049

-0.07097 ± 0.0036

-0.03572 ± 0.0014

Maricaulis maris MCS10

-0.09540 ± 0.0057

-0.07297 ± 0.0043

-0.04096 ± 0.0019


Computed OFDEG values using 5-mer oligos for 10 microbial genomes selected arbitrarily from NCBI. The values listed here represent the sample mean plus or minus the sample standard deviation, averaged over 100 sampling sites over the entire length of the genome. The differences reflect the strength of the signal in relation to sequence length.

Saeed and Halgamuge BMC Genomics 2009 10(Suppl 3):S10   doi:10.1186/1471-2164-10-S3-S10

Open Data