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BMC Genomics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 10 Supplement 3

Eighth International Conference on Bioinformatics (InCoB2009):Computational Biology

Proceedings

Asia Pacific Bioinformatics Network (APBioNet) Eighth International Conference on Bioinformatics (InCoB2009)

Singapore

7-11 September 2009

Edited by Shoba Ranganathan, Frank Eisenhaber, Joo Chuan Tong and Tin Wee Tan

Conference website

Introduction   Open Access

Extending Asia Pacific bioinformatics into new realms in the "-omics" era

Shoba Ranganathan, Frank Eisenhaber, Joo Tong, Tin Tan BMC Genomics 2009, 10(Suppl 3):S1 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

BOAT: Basic Oligonucleotide Alignment Tool

Shu-Qi Zhao, Jun Wang, Li Zhang, Jiong-Tang Li, Xiaocheng Gu, Ge Gao, Liping Wei BMC Genomics 2009, 10(Suppl 3):S2 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

An empirical study of choosing efficient discriminative seeds for oligonucleotide design

Won-Hyoung Chung, Seong-Bae Park BMC Genomics 2009, 10(Suppl 3):S3 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation

Jittima Piriyapongsa, Chumpol Ngamphiw, Anunchai Assawamakin, Pongsakorn Wangkumhang, Payiarat Suwannasri, Uttapong Ruangrit, Gallissara Agavatpanitch, Sissades Tongsima BMC Genomics 2009, 10(Suppl 3):S4 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Computational identification and experimental validation of PPRE motifs in NHE1 and MnSOD genes of Human

Gireedhar Venkatachalam, Alan Kumar, Loo Yue, Shazib Pervaiz, Marie Clement, Meena Sakharkar BMC Genomics 2009, 10(Suppl 3):S5 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

A multi-factor model for caspase degradome prediction

Lawrence JK Wee, Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan BMC Genomics 2009, 10(Suppl 3):S6 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Development of a database system for mapping insertional mutations onto the mouse genome with large-scale experimental data

Wenwei Yang, Ke Jin, Xing Xie, Dongsheng Li, Jigang Yang, Li Wang, Ning Gu, Yang Zhong, Ling V Sun BMC Genomics 2009, 10(Suppl 3):S7 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources

Jeongheui Lim, Sang-Yoon Kim, Sungmin Kim, Hae-Seok Eo, Chang-Bae Kim, Woon Paek, Won Kim, Jong Bhak BMC Genomics 2009, 10(Suppl 3):S8 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

TTS Mapping: integrative WEB tool for analysis of triplex formation target DNA Sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome

Piroon Jenjaroenpun, Vladimir A Kuznetsov BMC Genomics 2009, 10(Suppl 3):S9 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

The oligonucleotide frequency derived error gradient and its application to the binning of metagenome fragments

Isaam Saeed, Saman K Halgamuge BMC Genomics 2009, 10(Suppl 3):S10 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases

Elsa Chacko, Shoba Ranganathan BMC Genomics 2009, 10(Suppl 3):S11 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

MitoVariome: a variome database of human mitochondrial DNA

Yong Lee, Woo-Yeon Kim, Mihyun Ji, Ji Kim, Jong Bhak BMC Genomics 2009, 10(Suppl 3):S12 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads

Hua Bao, Yuanyan Xiong, Hui Guo, Renchao Zhou, Xuemei Lu, Zhen Yang, Yang Zhong, Suhua Shi BMC Genomics 2009, 10(Suppl 3):S13 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Measuring similarity between gene expression profiles: a Bayesian approach

Viet-Anh Nguyen, Pietro Lió BMC Genomics 2009, 10(Suppl 3):S14 (3 December 2009)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Improving gene expression similarity measurement using pathway-based analytic dimension

Changwon Keum, Jung Woo, Won Oh, Sue-Nie Park, Kyoung No BMC Genomics 2009, 10(Suppl 3):S15 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

A model selection approach to discover age-dependent gene expression patterns using quantile regression models

Joshua WK Ho, Maurizio Stefani, Cristobal G dos Remedios, Michael A Charleston BMC Genomics 2009, 10(Suppl 3):S16 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

MINER: exploratory analysis of gene interaction networks by machine learning from expression data

Sidath Kadupitige, Kin Leung, Julia Sellmeier, Jane Sivieng, Daniel R Catchpoole, Michael E Bain, Bruno A Gaëta BMC Genomics 2009, 10(Suppl 3):S17 (3 December 2009)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440

Seong-Jin Park, Jong-Soon Choi, Byoung-Chul Kim, Seong-Woong Jho, Jea-Woon Ryu, Daeui Park, Kyung-A Lee, Jong Bhak, Seung Il Kim BMC Genomics 2009, 10(Suppl 3):S18 (3 December 2009)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Comparative study of protein-protein interaction observed in PolyGalacturonase-Inhibiting Proteins from Phaseolus vulgaris and Glycine max and PolyGalacturonase from Fusarium moniliforme

Aditi Maulik, Hiren Ghosh, Soumalee Basu BMC Genomics 2009, 10(Suppl 3):S19 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

MitoInteractome: Mitochondrial protein interactome database, and its application in 'aging network' analysis

Rohit Reja, AJ Venkatakrishnan, Jungwoo Lee, Byoung-Chul Kim, Jea-Woon Ryu, Sungsam Gong, Jong Bhak, Daeui Park BMC Genomics 2009, 10(Suppl 3):S20 (3 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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