Table 6

Gene ontology (GO) annotation summary for the orthologous AS gene set.

A. Molecular Function

% Chicken genes

% Human genes

% Mouse genes


Binding

53.2

77.6

75.0

Catalytic activity

20.6

35.8

36.0

Molecular transducer activity

7.5

15.4

13.9

Transcription regulator activity

6.9

10.4

9.4

Transporter activity

4.9

10.1

10.3

Structural molecule activity

2.4

5.9

4.7

Enzyme regulator activity

2.3

5.9

4.9

Other

8.5

7.3

6.8

B. Biological Process

% Chicken genes

% Human genes

% Mouse genes

Cellular process

45.2

73.6

69.8

metabolic process

30.0

52.1

47.7

Biological regulation

27.4

46.9

42.6

Pigmentation

25.8

43.8

39.9

Developmental process

21.6

35.8

32.7

Multicellular organismal process

20.5

32.2

28.4

Localization

13.7

24.8

24.1

Establishment of localization

10.7

20.7

20.6

Response to stimulus

7.6

18.7

16.4

Other

19

33.3

32.7

C. Cellular Component

% Chicken genes

% Human genes

% Mouse genes

Cell

47.8

83.7

79.9

Cell part

47.8

83.7

79.9

Organelle

28.5

52.1

49.5

Organelle part

10.8

25.8

23.6

Macromolecular complex

9.1

18.0

18.0

Extracellular region

4.1

11.1

15.8

Membrane-enclosed lumen

3.5

9.6

18.0

Extracellular region part

2.3

5.2

13.6

Others

4.0

4.1

7.9


Chacko and Ranganathan BMC Genomics 2009 10(Suppl 1):S5   doi:10.1186/1471-2164-10-S1-S5

Open Data