Supplements
Editor-in-Chief Melissa Norton, MD
Biology Editor Penelope Webb, PhD
In-house Editor Matthew Kaiser PhD
BMC Genomics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 10 Suppl 1
The 2008 International Conference on Bioinformatics & Computational Biology (BIOCOMP'08)
Research
from The 2008 International Conference on Bioinformatics & Computational Biology (BIOCOMP'08)
Las Vegas, NV, USA. 14
17 July 2008
Edited by Youping Deng, Mary Qu Yang, Hamid R Arabnia, and Jack Y Yang
Publication of this supplement was made possible with support from the International Society of Intelligent Biological Medicine (ISIBM).
Introduction
High-throughput next-generation sequencing technologies foster new cutting-edge computing techniques in bioinformatics Mary Qu Yang, Brian D Athey, Hamid R Arabnia, Andrew H Sung, Qingzhong Liu, Jack Y Yang, Jinghe Mao, Youping Deng BMC Genomics 2009, 10 (Suppl 1):I1 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Prediction of DNA-binding residues from protein sequence information using random forests Liangjiang Wang, Mary Qu Yang, Jack Y Yang BMC Genomics 2009, 10 (Suppl 1):S1 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Reconstruct gene regulatory network using slice pattern model Yadong Wang, Guohua Wang, Bo Yang, Haijun Tao, Jack Y Yang, Youping Deng, Yunlong Liu BMC Genomics 2009, 10 (Suppl 1):S2 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Comparison of feature selection and classification for MALDI-MS data Qingzhong Liu, Andrew H Sung, Mengyu Qiao, Zhongxue Chen, Jack Y Yang, Mary Qu Yang, Xudong Huang, Youping Deng BMC Genomics 2009, 10 (Suppl 1):S3 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Genome-wide prediction of cis -acting RNA elements regulating tissue-specific pre-mRNA alternative splicing Xin Wang, Kejun Wang, Milan Radovich, Yue Wang, Guohua Wang, Weixing Feng, Jeremy R Sanford, Yunlong Liu BMC Genomics 2009, 10 (Suppl 1):S4 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse Elsa Chacko, Shoba Ranganathan BMC Genomics 2009, 10 (Suppl 1):S5 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Annotating the human genome with Disease Ontology John D Osborne, Jared Flatow, Michelle Holko, Simon M Lin, Warren A Kibbe, Lihua (Julie) Zhu, Maria I Danila, Gang Feng, Rex L Chisholm BMC Genomics 2009, 10 (Suppl 1):S6 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Unfoldomics of human diseases: linking protein intrinsic disorder with diseases Vladimir N Uversky, Christopher J Oldfield, Uros Midic, Hongbo Xie, Bin Xue, Slobodan Vucetic, Lilia M Iakoucheva, Zoran Obradovic, A Keith Dunker BMC Genomics 2009, 10 (Suppl 1):S7 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data Jianhua Ruan, Youping Deng, Edward J Perkins, Weixiong Zhang BMC Genomics 2009, 10 (Suppl 1):S8 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Energy profile and secondary structure impact shRNA efficacy Hong Zhou, Xiao Zeng BMC Genomics 2009, 10 (Suppl 1):S9 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
RBT-GA: a novel metaheuristic for solving the multiple sequence alignment problem Javid Taheri, Albert Y Zomaya BMC Genomics 2009, 10 (Suppl 1):S10 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Genomic and systems evolution in Vibrionaceae species Jianying Gu, Jennifer Neary, Hong Cai, Audrey Moshfeghian, Stephen A Rodriguez, Timothy G Lilburn, Yufeng Wang BMC Genomics 2009, 10 (Suppl 1):S11 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Protein disorder in the human diseasome: unfoldomics of human genetic diseases Uros Midic, Christopher J Oldfield, A Keith Dunker, Zoran Obradovic, Vladimir N Uversky BMC Genomics 2009, 10 (Suppl 1):S12 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
PDA: an automatic and comprehensive analysis program for protein-DNA complex structures RyangGuk Kim, Jun-tao Guo BMC Genomics 2009, 10 (Suppl 1):S13 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Differences in duplication age distributions between human GPCRs and their downstream genes from a network prospective Yong Huang, Ying Zheng, Zhixi Su, Xun Gu BMC Genomics 2009, 10 (Suppl 1):S14 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Reverse engineering module networks by PSO-RNN hybrid modeling Yuji Zhang, Jianhua Xuan, Benildo G de los Reyes, Robert Clarke, Habtom W Ressom BMC Genomics 2009, 10 (Suppl 1):S15 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
HAPPI: an online database of comprehensive human annotated and predicted protein interactions Jake Yue Chen, SudhaRani Mamidipalli, Tianxiao Huan BMC Genomics 2009, 10 (Suppl 1):S16 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Comparing 2-nt 3' overhangs against blunt-ended siRNAs: a systems biology based study Preetam Ghosh, Robert Dullea, James E Fischer, Tom G Turi, Ronald W Sarver, Chaoyang Zhang, Kalyan Basu, Sajal K Das, Bradley W Poland BMC Genomics 2009, 10 (Suppl 1):S17 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Word-based characterization of promoters involved in human DNA repair pathways Jens Lichtenberg, Edwin Jacox, Joshua D Welch, Kyle Kurz, Xiaoyu Liang, Mary Qu Yang, Frank Drews, Klaus Ecker, Stephen S Lee, Laura Elnitski, Lonnie R Welch BMC Genomics 2009, 10 (Suppl 1):S18 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
A distribution-free convolution model for background correction of oligonucleotide microarray data Zhongxue Chen, Monnie McGee, Qingzhong Liu, Megan Kong, Youping Deng, Richard H Scheuermann BMC Genomics 2009, 10 (Suppl 1):S19 (7 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
17 July 2008
