Table 7

Sequence clusters (pairs of sequences). Sequence clusters containing pairs of sequences for the bidirectional (a) and unidirectional (b) promoter sets. Each sequence occurs in only one cluster. The sequences are clustered based on the number of words (within the top 60 overrepresented words) that are shared between them with the distance denoting the number of words not shared between them.

(a) Bidirectional

(b) Unidirectional


Sequence 1

Sequence 2

Distance

Sequence 1

Sequence 2

Distance


chr3:185561446–185562546

chr11:832429–833529

54

chr10:50416978–50418078

chr3:188006884–188007984

57


chr19:53365272–53366372

chr19:7600339–7601439

55

chr12:52868924–52870024

chr7:73306574–73307674

57


chr11:18299718–18300818

chr15:41589928–41591028

56

chr5:68890824–68891924

chr19:55578407–55579507

58


chr4:57538069–57539168

chr19:48776246–48777346

56

chr6:30982955–30984055

chr9:99499360–99500460

58


chr11:107598052–107599152

chr12:131773918–131775018

56

chr10:131154509–131155609

chr19:50618917–50620017

58


chr13:107668425–107669525

chr1:11674165–11675265

57

chr5:86744492–86745592

chr17:30330654–30331754

58


chr6:43650922–43652022

chr16:2037768–2038868

57

chr11:118471287–118472387

chr8:55097461–55098561

58


chr22:36678663–36679763

chr11:61315725–61316825

58

chr16:13920523–13921623

chr8:101231014–101232114

58


chr5:60276548–60277648

chr22:40346240–40347340

58

chr5:131919528–131920628

chr19:1046236–1047336

58


chr11:93866588–93867688

chr3:130641442–130642542

58

chr12:108015528–108016628

chr16:56053079–56054179

59


chr17:7327421–7328521

chr17:1679094–1680194

58

chr1:28113723–28114823

chr2:216681376–216682476

59


chr20:5055168–5056268

chr15:38773660–38774760

58

chr8:91065972–91067072

chr4:39044247–39045347

59


chr14:19992129–19993229

chr11:66877493–66878593

59

chr14:60270222–60271322

chr11:47192088–47193188

59


chr17:38530557–38531657

chr13:31786616–31787716

59

chr7:7724663–7725763

chr11:62284590–62285690

59


chr12:122683333–122684433

chr13:33289233–33290333

chr12:116937892–116938992

59


chr5:82408167–82409267

chr9:109084364–109085464

chr7:101906286–101907386

59


chr2:127768122–127769222

chr8:42314186–42315286

chr19:50565569–50566669

59


chr12:102882746–102883846

chr3:9764704–9765804

chr14:49224583–49225683

59


chr13:102295174–102296274

chr6:30790834–30791934

59


chr12:912403–913503


chr2:128332074–128333174


chr7:44129555–44130655


chr11:73980276–73981376


Lichtenberg et al. BMC Genomics 2009 10(Suppl 1):S18   doi:10.1186/1471-2164-10-S1-S18

Open Data