Table 2

Examples of lineage-unique LSE families in representative Vibrionaceae genomes. The number in parenthesis shows the number of lineage-unique LSE families in each genome

Strain

Function description

No. genes in families


V. cholerae O395 (49)

DNA circulation protein

2

DNA transposition protein

2

Tail tube protein

2

Phage virion morphogenesis protein

2

gp27/gp16/gp05

6


V. parahaemolyticus RIMD 2210633 (24)

Type 1 pili subunit CsuA/B protein

2

Dienelactone hydrolase domain protein

2

Site-specific recombinase

2


V. vulnificus CMCP6 (16)

Permease of the major facilitator superfamily

2

Transposase

2

Cation transport ATPase

2

Cobalamin biosynthesis protein CobW

2


V. vulnificus YJ016 (11)

4-hydroxyphenylacetate degradation bifunctionalisomerase

2

CRISPR-associated protein

4


V. splendidus LGP32 (13)

Transposase of insertion sequence ISVisp4

18

Protein sufB

2

Sensory box histidine kinase/response regulator

2


A. fischeri MJ11 (10)

Response regulator receiver protein

2

Acetyltransferase

3


A. fischeri ES114 (3)

Anaerobic glycerol-3-phosphate dehydrogenase subunit C (RebB)

9


A. salmonicida LFI1238 (12)

DNA-binding protein HU-alpha

2

Phage replication repressor RstR

2

Shufflon-specific DNA recombinase

2

Transposase of insertion sequence families

102


P. profundum SS9 (90)

Selenoprotein A of glycine-reductase

2

NosR, Regulator of nitric oxide reductase transcription

2

Acetolactate synthase, iolD

2

Myo-inositol catabolismprotein iolB

2

Anaerobic dicarboxylate transporter

2

Alpha-galactosidase (melibiase)

2

Protease/scaffold protein

2

Sodium: dicarboxylate symporter

3

Methyl-accepting chemotaxis protein

3

Reverse transcriptase/maturase family protein

3

Helix-turn-helix XRE-family like proteins

8

Transposase

36


Gu et al. BMC Genomics 2009 10(Suppl 1):S11   doi:10.1186/1471-2164-10-S1-S11

Open Data