Table 1

Genomic sequences used in the comparative analysis of Vibrionaceae and the calculated number of lineage specific genes in each genome. The inter-genomic search yielded a core genome comprised of 1,882 orthologous proteins

Strains

Accession ID

No. Genes in genome

No. Protein coding genes

% core in genome

No. Families with LSE

No. LSE genes

% LSEs in genome


Lineage unique

Typical LSE


V. cholerae N16961

NC_002505 (chr1)

NC_002506 (chr2)

4009

3887

48.86

11

16

59

1.54

V. cholerae O395

NC_009456 (chr 1) NC_009457 (chr 2)

3998

3878

49.05

49

25

153

3.95

V. parahaemolyticus RIMD 2210633

NC_004603 (chr1) NC_004605 (chr2)

4708

4548

42.17

24

30

109

2.40

V. vulnificus CMCP6

NC_004459 (chr1) NC_004460 (chr2)

4796

4796

39.82

16

24

121

2.52

V. vulnificus YJ016

NC_005139 (chr1) NC_005140 (chr2) NC_005128 (plasmid)

4897

4758

40.08

11

26

83

1.74

V. harveyi ATCC BAA-1116

NC_009783 (chr 1) NC_009784 (chr 2) NC_009777 (plasmid)

6238

6040

31.79

97

56

665

11.01

V. splendidus LGP32

NC_011753 (chr 1) NC_011744 (chr 2)

4604

4431

43.35

13

56

165

3.72

A. fischeri MJ11

NC_011184 (chr 1) NC_011186 (chr 2) NC_011185 (plasmid)

4175

4039

47.49

10

17

56

1.39

A. fischeri ES114

NC_006840 (chr1) NC_006841 (chr2) NC_006842 (plasmid)

4038

3882

49.48

3

19

50

1.29

A. salmonicida LFI1238

NC_011312 (chr 1) NC_011313 (chr 2) NC_011314 (plasmid) NC_011315 (plasmid) NC_011316 (plasmid)

4352

3839

49.99

12

47

248

6.48

Photobacterium profundum SS9

NC_006370 (chr 1) NC_006371 (chr 2) NC_005871 (plasmid)

5702

5489

35.20

90

87

551

10.04


Gu et al. BMC Genomics 2009 10(Suppl 1):S11   doi:10.1186/1471-2164-10-S1-S11

Open Data