Table 2 |
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|
Classification of differentially expressed probe sets in pairwise comparisons |
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|
Comparisons |
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|
|
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|
Probe set category |
IVF vs. CT1 |
IVF vs. CT4 |
IVF vs. DC1 |
IVF vs. DC4 |
CT1 vs. CT4 |
CT1 vs. DC1 |
CT1 vs. DC4 |
CT4 vs. DC1 |
CT4 vs. DC4 |
DC1 vs. DC4 |
|
|
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|
Genes |
63 |
104 |
747 |
763 |
44 |
574 |
563 |
421 |
461 |
23 |
|
Similar to... |
106 |
180 |
1564 |
1597 |
81 |
1071 |
1132 |
898 |
995 |
34 |
|
Hypothetical proteins |
4 |
10 |
90 |
102 |
0 |
69 |
80 |
65 |
76 |
6 |
|
cDNA clones |
0 |
1 |
24 |
28 |
0 |
19 |
16 |
17 |
16 |
0 |
|
Transcripts with strong similarity to a known gene |
1 |
3 |
26 |
23 |
0 |
17 |
17 |
19 |
21 |
0 |
|
Transcripts with moderate similarity to a known gene |
2 |
0 |
24 |
27 |
2 |
13 |
16 |
12 |
14 |
2 |
|
Transcripts with weak similarity to a known gene |
1 |
0 |
13 |
15 |
1 |
10 |
17 |
8 |
10 |
0 |
|
Unknown transcripts |
93 |
113 |
872 |
873 |
64 |
686 |
747 |
596 |
683 |
18 |
|
|
||||||||||
|
Total |
270 |
411 |
3360 |
3428 |
192 |
2459 |
2588 |
2036 |
2276 |
83 |
|
|
||||||||||
|
The probe set categories correspond to NetAffx Bovine GeneChip (Nov. 2007 Annotation). |
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|
Rodriguez-Osorio et al. BMC Genomics 2009 10:190 doi:10.1186/1471-2164-10-190 |
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