Table 2

Classification of differentially expressed probe sets in pairwise comparisons

Comparisons


Probe set category

IVF vs. CT1

IVF vs. CT4

IVF vs. DC1

IVF vs. DC4

CT1 vs. CT4

CT1 vs. DC1

CT1 vs. DC4

CT4 vs. DC1

CT4 vs. DC4

DC1 vs. DC4


Genes

63

104

747

763

44

574

563

421

461

23

Similar to...

106

180

1564

1597

81

1071

1132

898

995

34

Hypothetical proteins

4

10

90

102

0

69

80

65

76

6

cDNA clones

0

1

24

28

0

19

16

17

16

0

Transcripts with strong similarity to a known gene

1

3

26

23

0

17

17

19

21

0

Transcripts with moderate similarity to a known gene

2

0

24

27

2

13

16

12

14

2

Transcripts with weak similarity to a known gene

1

0

13

15

1

10

17

8

10

0

Unknown transcripts

93

113

872

873

64

686

747

596

683

18


Total

270

411

3360

3428

192

2459

2588

2036

2276

83


The probe set categories correspond to NetAffx Bovine GeneChip (Nov. 2007 Annotation).

Rodriguez-Osorio et al. BMC Genomics 2009 10:190   doi:10.1186/1471-2164-10-190

Open Data