Table 4

Autocorrelation for derived allele frequency and the frequency of adjacent derived polymorphism for B. taurus and simulated populations

Chromosome

Angus

Holstein

Simulated 1

Simulated 2


1

0.054

0.004

0.301

0.17

2

0.141

0.16

-0.009

0.075

3

0.011

0.028

0.146

-0.146

4

-0.014

0.007

-0.069

-0.123

5

0.113

0.142

-0.003

0.007

6

0.073

0.036

-0.109

0.002

7

0.125

0.082

0.293

0.178

8

0.145

0.093

-0.063

0.055

9

-0.013

-0.005

0.086

-0.042

10

0.031

0.055

-0.211

-0.012

11

0.063

0.095

0.002

0.066

12

0.098

0.16

0.014

0.087

13

0.196

0.244

0.069

0.143

14

0.068

0.155

-0.081

-0.057

15

0.047

0.043

0.089

0.102

16

-0.017

0.024

-0.073

-0.023

17

-0.042

-0.083

0.002

0.014

18

0.055

0.077

-0.072

-0.271

19

0.007

-0.048

-0.046

-0.136

20

0.034

0.034

0.063

0.015

21

-0.037

-0.023

0.078

-0.132

22

0.029

0.026

-0.141

0.042

23

0.11

-0.035

-0.021

-0.161

24

-0.07

0.017

-0.055

-0.024

25

0.127

0.211

0.109

-0.12

26

0.082

0.252

-0.042

0.104

27

0.017

0.134

-0.155

0.049

28

-0.035

-0.1

0.035

-0.117

29

0.175

0.096

0.149

0.02

X

0.056

0.085

-

-

Average (s.e)

0.054 (0.012)

0.066 (0.016)

0.01 (0.022)

-0.008 (0.02)

Pvalue

p < 0.001

p < 0.001

p > 0.05

p > 0.05


*X chromosome not modelled in simulated populations

MacEachern et al. BMC Genomics 2009 10:181   doi:10.1186/1471-2164-10-181

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