Table 4

Significant associations to traits across 10 Mb of BTA2

Locus

BTA2 position

Pave

FST

RFI

TypeRFI

IMF

TypeIMF


rs29021692

60071311

0.625

0.098

2.782

TRO, TTL

rs29020674

60485596

0.097

0.253

2.513

TROα

rs29017559

62324132

0.155

0.068

1.985

TTL

rs29019351

64740286

0.866

0.313

3.057

TEM

2.483

TEM

rs29019352

64740428

0.115

0.314

3.130

TEM

2.490

TEM

rs29020718

64778749

0.096

0.204

2.203

TEM

rs29020715

64778938

0.904

0.204

2.111

TEM

rs29021800

64792978

0.134

0.312

3.122

TEM

2.403

TEM

rs29021802

64797701

0.043

0.179

1.986

TTL

rs29015936

65535887

0.853

0.034

2.229

TTL

rs29015937

65535915

0.464

0.100

1.986

TRO

rs29024553

68241372

0.278

0.070

2.034

TTL

rs29010833

69818303

0.680

0.041

2.267

TTL


Pave is the average allele frequency of p0 across the breeds, RFI is the ratio between the additive effect and its standard error, TypeRFI is the type of cattle in which the effect was estimated, IMF is the ratio between the additive effect and its standard error, TypeIMF is the type of cattle in which the effect was estimated. TEM temperate, TRO tropical, TTL total. TROα means the effect is the allele substitution effect.

Barendse et al. BMC Genomics 2009 10:178   doi:10.1186/1471-2164-10-178

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