Table 3

Trait associations and high FST values

Locus

Chr

Position

Group

N

p0

Vr

a

SEa

α

SEα


Multiple traits

RFI

rs29019351

2

64740286

TEM

104

0.91

0.0370

0.654

0.214

-0.169

0.219

rs29019352

2

64740428

TEM

104

0.09

0.0370

-0.654

0.209

0.169

0.223

rs29021800

2

64792978

TEM

102

0.08

0.0412

-0.653

0.209

0.259

0.223

rs29025811

5

51065596

TRO

65

0.76

0.0405

-0.401

0.191

-0.374

0.206

rs29010304

28

24504312

TRO

65

0.28

0.0659

0.332

0.218

0.487

0.239

Yield

rs29015041

6

88160023

TEM

58

0.16

0.0517

-0.900

0.320

-0.555

0.333

IMF

rs29019351

2

64740286

TEM

99

0.91

0.0212

0.554

0.223

0.354

0.243

rs29019352

2

64740428

TEM

99

0.09

0.0212

-0.554

0.222

-0.354

0.250

rs29021800

2

64792978

TEM

97

0.09

0.0190

-0.550

0.229

-0.282

0.245

rs29025811

5

51065596

TRO

62

0.75

0.0808

-0.512

0.159

-0.344

0.162

rs29015041

6

88160023

TEM

99

0.22

0.0380

-0.354

0.182

-0.439

0.193

rs29010304

28

24504312

TRO

62

0.29

0.0972

0.228

0.162

0.440

0.188

Single traits

RFI

rs29021601

11

39253966

TEM

104

0.84

0.0403

-0.363

0.201

-0.483

0.209

rs29019566

15

18646517

TEM

102

0.93

0.0253

0.505

0.210

-0.115

0.214

rs29026034

16

23320981

TEM

103

0.83

0.0399

-0.680

0.188

-0.286

0.179

Yield

rs29011076

4

11913823

TEM

58

0.69

0.1102

0.527

0.374

0.873

0.341

rs29013771

4

54568493

TEM

53

0.13

0.0454

0.650

0.331

-0.317

0.378

rs29026560

9

47205531

TEM

58

0.28

0.0505

1.038

0.327

0.733

0.324

IMF

rs29012117

13

28925713

TRO

62

0.57

0.0814

-0.435

0.177

-0.410

0.177

rs29021963

16

31068223

TRO

57

0.62

0.1100

-0.469

0.177

-0.392

0.242


Locus dbSNP identifier, Chr chromosome Position in bp, Group breed type, temperate or tropical, N sample size, p0 is the allele higher up the alphabet, Vr is the residual variance explained by the genotypes, a is the additive effect, SEa is the standard error of a, α is the allele substitution effect, SEαis the standard error of α.

RFI residual food intake in kg per day, Yield is the meat yield of the animal as a percentage, and IMF is the intramuscular fat percentage

Barendse et al. BMC Genomics 2009 10:178   doi:10.1186/1471-2164-10-178

Open Data