Table 5

Bioinformatics on the four highly informative SNPs.

SNP markers


rs29016875

rs29015574

rs29024867

rs41257187


Chromosome

10

9

4

1


Gene candidates (NCBI-BLASTN)


Name:

Cytoplasmic dynein light chain

(NW 001492841)

Rab3A-interacting molecule (NW_001495537)

Collagen I, alpha2

(NW 001494859)

Integrin β5 (NW001493888)

Length:

442/501

474/501

500/501

76/78

Identity:

96%

99%

99%

98%

E-Value:

9 × 10-122

0.00

0.00

4 × 10-32


Transcription factors (TRANSFAC-BLASTX)


No hits found

MEF-2D

(Xl; T-01771)

Ceh-24

(S.Cb; T-03376)

No hits found

Irx-3

(Mm; T-02439)

RAR-β3

(Mm; T-01339)


S.Cb, Xl, and Mm stand for S. Caenorhabditis Briggsae, Xenopus laevis, and Mus musculus, respectively.

Irx, Ceh, and RAR stand for Iroquois homeobox, Caenorhabditis elegance homeodomain factor, and Retinoic acid receptor, respectively.

Feugang et al. BMC Genomics 2009 10:176   doi:10.1186/1471-2164-10-176

Open Data